PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0106900
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 316aa    MW: 34406.6 Da    PI: 6.3914
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0106900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.36.4e-14101152155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A++++k+L+
  Spipo0G0106900 101 QRMTHIAVERNRRRQMNEHLAVLRSLMPES---YIQRGDQASIVAGAIDFVKELE 152
                     79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.68E-1799169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.95E-1599156No hitNo description
PROSITE profilePS5088815.561100151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-15101170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-11101152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-10106157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MTLEALTSSE LSSFIVYDTI SATGHHHHHE LYADPSHGAF YPVDNAENLE PATGYAAAVA  60
DSPGTEQPNG RPSSSSTAAQ GRKKRRRRPR SCKNKEEAES QRMTHIAVER NRRRQMNEHL  120
AVLRSLMPES YIQRGDQASI VAGAIDFVKE LEQLLQSLEA QKMTLQQQRR RACGASDAED  180
GGAAAGDGDP PPFSQFFSYP QYIWCHGTRE TSPSPAEGHR PPVGSVADIE VTLIETFANL  240
RILSPRRPGQ LLKMVAGFQT LHLTVLHLSV TTMDALVLYS ISAKVEEGCN LTSVDDIAAA  300
VHHMLSLIEA EAALA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18187RKKRRRR
28287KKRRRR
3101112RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010919940.21e-130transcription factor bHLH71 isoform X2
SwissprotQ9C7T44e-71BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A1D1Y8K21e-134A0A1D1Y8K2_9ARAE; Transcription factor bHLH96
STRINGXP_008796282.11e-115(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37123678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46690.11e-50beta HLH protein 71
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]