PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0104700
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family Trihelix
Protein Properties Length: 431aa    MW: 48908 Da    PI: 4.104
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0104700genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix40.76e-13162246286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     W+++ + +L++a  ++  + +r++ +   W ev+kk+ ++    rs  qC+++++ l+k+ykk+k++ ++  s+s +++ yf++++
  Spipo0G0104700 162 WSEDSTFVLLDAWGDLYLQNGRKSIRSEEWVEVAKKVsQSSRTARSEAQCRNRLDTLKKKYKKEKTRISES-SDSNTRWIYFSKMD 246
                     *************************************6667789***********************9995.777779*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.6E-19161248No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MDDTEDDARY PPNPHHHRSN SSPHLHNLPG RSFSAQALPP PRRRYPRGEE EEDDAEEDEE  60
VEGSEAEEEG EQNELDQSAE DEVEDDEEQE EEEEEEEEVE DRRGGGGGGG GGGGEGDPRR  120
RKRRRLDRLA LGFEFAPRVA AGSTPSAPSA SRLPPRNSPA DWSEDSTFVL LDAWGDLYLQ  180
NGRKSIRSEE WVEVAKKVSQ SSRTARSEAQ CRNRLDTLKK KYKKEKTRIS ESSDSNTRWI  240
YFSKMDSLMS SPPPASARQQ PRLPCGFDSG EYVFMNSKVY VSRSNDLDEM RDSPGDSECE  300
EEEEDDESDG LPPERPRPKE SSESSFRMLA DSIQKFGEIY EKIEDSKRQH MAELERMRKE  360
FHEDLEMQKR QILERAQAEI AKIRQGSDDE DDDEDDDEDD NDDEGEGQED DEGINNADEE  420
MDVSLEEGSG *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117121PRRRK
2117125PRRRKRRRL
3118124RRRKRRR
4120124RKRRR
5121125KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008808856.11e-112trihelix transcription factor ASIL2
TrEMBLA0A1D1XR701e-142A0A1D1XR70_9ARAE; Peptide chain release factor 1 (Fragment)
STRINGXP_008808856.11e-112(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80902224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.13e-53Trihelix family protein