PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo0G0086100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | Trihelix | ||||||||
Protein Properties | Length: 372aa MW: 42105.4 Da PI: 7.4937 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 81.6 | 1.1e-25 | 64 | 146 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ L+++rrem+ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k++ + + + s+++ +++++ Spipo0G0086100 64 WIQDETRSLVALRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKQQVRAG--GGASKMSCYKEID 146 ******************************************************************9997..5566788899887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 8.432 | 56 | 120 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-4 | 57 | 122 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0016 | 60 | 122 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 2.77E-28 | 62 | 127 | No hit | No description |
Pfam | PF13837 | 1.0E-19 | 63 | 148 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MYLPDKPRSV DYYKEEGRSI MMEVVGNNPV PQQQQQQQQQ QMIPAESSGE DHEMKAPKKR 60 AETWIQDETR SLVALRREMD GLFNTSKSNK HLWEQISAKM REKGFDRSPT MCTDKWRNLL 120 KEFKKAKQQV RAGGGASKMS CYKEIDELLK DRNKNDAGGG VAQYKSPTPS AKVDSYLQFS 180 DKARSTLNMD RHSDNDGLPL AITVADAVGA NGVPPWNWRD AGGLGGQSNA SYSGRVILVK 240 LGDYTRKIGI DAGAEAIKEA IKSAFGLRTR RAFWLEDEDE VVRSLDRDMP LGTYTLRLDE 300 GLTIKVCLYD ETERLQVHTE EKTLYTEEDF REFLSRRGWT GLREYGGFRT VDNLVELRQD 360 VVYQGVRLLG G* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2jmw_A | 4e-45 | 58 | 144 | 1 | 86 | DNA binding protein GT-1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00141 | DAP | Transfer from AT1G13450 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010930052.1 | 0.0 | trihelix transcription factor GT-1 | ||||
Swissprot | Q9FX53 | 1e-156 | TGT1_ARATH; Trihelix transcription factor GT-1 | ||||
TrEMBL | A0A1D1XQZ3 | 0.0 | A0A1D1XQZ3_9ARAE; Trihelix transcription factor GT-1 | ||||
STRING | XP_010248872.1 | 0.0 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5631 | 37 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13450.1 | 1e-154 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo0G0086100 |
Publications ? help Back to Top | |||
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