PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0083000
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family Trihelix
Protein Properties Length: 327aa    MW: 35486.4 Da    PI: 8.7819
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0083000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix42.61.6e-1323107186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +Wt++ + aLie+  e+  +l+rg+l++++W++v+ ++     + ++ +++ +qCk++++ l+k++k +k   ++      s+++++ +le
  Spipo0G0083000  23 CWTEEATEALIEVWGERFVELNRGNLRQKDWKDVAMAVnehlvAVGKPRKTDIQCKNRIDTLKKKFKLEKSKPGS------SRWAFYPRLE 107
                     8*************************************55553333446699***************99988886......5899999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.8E-2421109No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MEHLQRGQHH ASYAGGGGGR EDCWTEEATE ALIEVWGERF VELNRGNLRQ KDWKDVAMAV  60
NEHLVAVGKP RKTDIQCKNR IDTLKKKFKL EKSKPGSSRW AFYPRLEELI CPDTSSPAGN  120
GGGKKPQGSG GTSARSQRDS PVSFTIKRRS PSNANPNAAA YSEGSSSRSK MNSSPVSSES  180
SRGDDGRVNN DGDGDEGEGN GLFHGRKVVL GRRRQWGSSL DIDRLVGGGG GSGGSGGSGG  240
VGMDGAFGEL AKAIVKFGEI YERVENSKQQ QMLELERQRM EFAKELEFQR MQMFMEAQLE  300
LEKMKRPKYS SGAGEDTDVT SSVSLS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008789153.11e-84trihelix transcription factor ASIL2 isoform X4
RefseqXP_010937909.19e-85trihelix transcription factor ASIL2 isoform X1
SwissprotQ9LJG85e-31ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A2H3XVH92e-83A0A2H3XVH9_PHODC; trihelix transcription factor ASIL2 isoform X4
STRINGXP_008789150.12e-81(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24043069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11100.15e-28sequence-specific DNA binding transcription factors