PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo0G0079600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | AP2 | ||||||||
Protein Properties | Length: 155aa MW: 18190.5 Da PI: 10.672 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 48.7 | 1.8e-15 | 1 | 58 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GV++++++gr++A+++d ++ g ++ +++s g ++t+e+Aa+a++ a++k++g Spipo0G0079600 1 YRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVSQGGYDTEEKAARAYDLAALKYWG 58 9******************988886678446*************************98 PP | |||||||
2 | AP2 | 27.3 | 9.3e-09 | 103 | 138 | 3 | 42 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeA 42 y+GV+++++ grW A+I + +k +lg+f +eA Spipo0G0079600 103 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSK-FEA 138 9***************988532...5********99.998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.48E-19 | 1 | 67 | No hit | No description |
PROSITE profile | PS51032 | 18.558 | 1 | 66 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.09E-16 | 1 | 67 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.5E-6 | 1 | 9 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-14 | 1 | 66 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-12 | 1 | 58 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-24 | 1 | 72 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-6 | 48 | 68 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.08E-7 | 101 | 137 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 9.256 | 102 | 138 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-5 | 102 | 137 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.2E-4 | 102 | 149 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-4 | 103 | 138 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
YRGVTRHRWT GRYEAHLWDN SCKKEGQTRK GRQVSQGGYD TEEKAARAYD LAALKYWGPS 60 THINFPIEGY QGELEDMKNM SRQEYVAHLR RKSSGFSRGA SMYRGVTRHH QHGRWQARIG 120 RVAGNKDLYL GTFSKFEALW GFVYNSRQRC RLLLR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008779660.1 | 6e-91 | AP2-like ethylene-responsive transcription factor CRL5, partial | ||||
Swissprot | Q84Z02 | 1e-85 | CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5 | ||||
TrEMBL | A0A2H3X7Z8 | 1e-89 | A0A2H3X7Z8_PHODC; AP2-like ethylene-responsive transcription factor CRL5 | ||||
STRING | XP_009610222.1 | 7e-88 | (Nicotiana tomentosiformis) | ||||
STRING | XP_008779660.1 | 2e-90 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP797 | 38 | 151 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72570.1 | 3e-84 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo0G0079600 |
Publications ? help Back to Top | |||
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