PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0060800
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family GATA
Protein Properties Length: 275aa    MW: 29905.7 Da    PI: 6.6622
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0060800genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.42.7e-15213249135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg ++  Tp++Rrgp g+ktLCnaCGl+++ kg+
  Spipo0G0060800 213 CQHCGCSQasTPMMRRGPGGPKTLCNACGLMWANKGT 249
                     **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009798.3E-1272107IPR010399Tify domain
PROSITE profilePS5132014.28272107IPR010399Tify domain
PfamPF062004.4E-1375106IPR010399Tify domain
PfamPF062031.7E-17140182IPR010402CCT domain
PROSITE profilePS5101713.523140182IPR010402CCT domain
SMARTSM004013.8E-12207260IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.28E-11208256No hitNo description
Gene3DG3DSA:3.30.50.109.3E-15211254IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.71E-14212254No hitNo description
PfamPF003203.8E-13213249IPR000679Zinc finger, GATA-type
PROSITE patternPS003440213240IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.605218255IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MEGAMYDDDE RKLEEQMQLQ LQQHLQVMQQ LPARAEEGDG AMMGDALVGE GMVLRGVEDD  60
GSSLPVDAGG VGMSRPNQLT LSFQGQVYVF DSVPTDKVQA VLLLLGAQEL PPEVASLADP  120
SRQNERESNG FAQSTNSYHR QASLMRFKEK RKERCFDKKI RYHVRKEVAQ RMQRKKGQFI  180
SSKFNPEDAT PASPGSDLAP GACLEEAHQK TFCQHCGCSQ ASTPMMRRGP GGPKTLCNAC  240
GLMWANKGTL RDLSQSSAAA APPSPAFNAN NQAS*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002263707.11e-72PREDICTED: GATA transcription factor 24
RefseqXP_010655300.11e-72PREDICTED: GATA transcription factor 24
RefseqXP_010655302.11e-72PREDICTED: GATA transcription factor 24
SwissprotQ5Z4U55e-66GAT20_ORYSJ; GATA transcription factor 20
SwissprotQ8GXL75e-66GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A1D1YLW35e-84A0A1D1YLW3_9ARAE; GATA transcription factor 28 (Fragment)
STRINGVIT_09s0054g00440.t014e-72(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34603773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.23e-67ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]