PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0055000
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ERF
Protein Properties Length: 380aa    MW: 41916.3 Da    PI: 4.8071
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0055000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-18128177255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++  +++++g
  Spipo0G0055000 128 QYRGIRQRP-WGKWAAEIRDPKK---GVRVWLGTFNTAEEAARAYDCEARRIRG 177
                     69*******.**********954...4********************9999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.24E-21128186IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.1E-32128186IPR001471AP2/ERF domain
CDDcd000185.29E-31128187No hitNo description
SMARTSM003803.9E-36128191IPR001471AP2/ERF domain
PROSITE profilePS5103223.749128185IPR001471AP2/ERF domain
PRINTSPR003671.1E-11129140IPR001471AP2/ERF domain
PfamPF008472.0E-11129177IPR001471AP2/ERF domain
PRINTSPR003671.1E-11151167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MCGGAILSDL IPAARSRRVT VDHLWPPPDG DWLNASGPKN KKKKKKNHKE KSPPFLIEDE  60
DDFEADFREF DDSSEEEGEE LLDVKPFAFS ALAPFARASY SRDVESQFIG AEPEGLAEKS  120
SKRKRRNQYR GIRQRPWGKW AAEIRDPKKG VRVWLGTFNT AEEAARAYDC EARRIRGQKA  180
KVNFPEAAGA RRPTPRAAAA AAPKVPKPLN HEAMSNSYQS FNLESDLHRG SSSELEFAEE  240
KEATVKQAQY PNSDESGHYF TSTGGSSSDC SSFAWAAQDS KVSEINSVFA STRVEDESPQ  300
KKLKTDAALE EESAPFDLSG EIPDFEYANF LQVPFLNGCT GESVEILYGG GGGGGWAQEC  360
ENPIDLWCFN DMPPAPAIF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-20128185563ATERF1
3gcc_A2e-20128185563ATERF1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79873040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.22e-34related to AP2 12