PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo0G0050200

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

NAC

Protein Properties

Length: 356aa MW: 39114.8 Da PI: 7.8251

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo0G0050200	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.6	1.6e-55	18	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL+kkv++k +++ ++i evd +k+ePw+Lp ++k +ekew+fFs rd+ky+tg r+nrat++gyWkatgkdke+ Spipo0G0050200 18 LPPGFRFHPTDEELITHYLAKKVADKGFSA-RAIGEVDFNKCEPWELPWRAKMGEKEWFFFSVRDRKYPTGLRTNRATDAGYWKATGKDKEIRG- 110 79*************************9.89***********888999***********************************9. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++lvg+kktLvfy+grapkgekt+W+mheyrl Spipo0G0050200 111 GRSLVGMKKTLVFYRGRAPKGEKTNWIMHEYRL 143 999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.15E-63	15	170	IPR003441	NAC domain
PROSITE profile	PS51005	59.189	18	169	IPR003441	NAC domain
Pfam	PF02365	6.1E-29	19	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MEQDGCFLAT GGDDHLELPP GFRFHPTDEE LITHYLAKKV ADKGFSARAI GEVDFNKCEP 60 WELPWRAKMG EKEWFFFSVR DRKYPTGLRT NRATDAGYWK ATGKDKEIRG GRSLVGMKKT 120 LVFYRGRAPK GEKTNWIMHE YRLDGKLSFY SLPNKSSEIE WVLCRVFYKN FSSTGGYGDG 180 AEKRATGPAR IGGSSSYYAG DAASMPPLVG SQSGRSASRK MGHMTCVFSS NQKSHEEKLV 240 EEFAGSALVS SSAAAAAATT TNSYSDFSRI PPPDGGLNRF LQSGAGWVQL LQREGCEVEK 300 EAGGSQSQET GLTSEMNPEI SSVLSRYDVR RLRFEGDAAP PAPSVGLPLD DCMWN*

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MEQDGCFLAT GGDDHLELPP GFRFHPTDEE LITHYLAKKV ADKGFSARAI GEVDFNKCEP  60
WELPWRAKMG EKEWFFFSVR DRKYPTGLRT NRATDAGYWK ATGKDKEIRG GRSLVGMKKT  120
LVFYRGRAPK GEKTNWIMHE YRLDGKLSFY SLPNKSSEIE WVLCRVFYKN FSSTGGYGDG  180
AEKRATGPAR IGGSSSYYAG DAASMPPLVG SQSGRSASRK MGHMTCVFSS NQKSHEEKLV  240
EEFAGSALVS SSAAAAAATT TNSYSDFSRI PPPDGGLNRF LQSGAGWVQL LQREGCEVEK  300
EAGGSQSQET GLTSEMNPEI SSVLSRYDVR RLRFEGDAAP PAPSVGLPLD DCMWN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-55	15	173	14	169	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-55	15	173	14	169	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-55	15	173	14	169	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-55	15	173	14	169	NO APICAL MERISTEM PROTEIN
3swm_A	6e-55	15	173	17	172	NAC domain-containing protein 19
3swm_B	6e-55	15	173	17	172	NAC domain-containing protein 19
3swm_C	6e-55	15	173	17	172	NAC domain-containing protein 19
3swm_D	6e-55	15	173	17	172	NAC domain-containing protein 19
3swp_A	6e-55	15	173	17	172	NAC domain-containing protein 19
3swp_B	6e-55	15	173	17	172	NAC domain-containing protein 19
3swp_C	6e-55	15	173	17	172	NAC domain-containing protein 19
3swp_D	6e-55	15	173	17	172	NAC domain-containing protein 19
4dul_A	4e-55	15	173	14	169	NAC domain-containing protein 19
4dul_B	4e-55	15	173	14	169	NAC domain-containing protein 19
Search in ModeBase

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808, ECO:0000269\|PubMed:18305205, ECO:0000305\|PubMed:15723790}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010937197.1	1e-117	NAC domain-containing protein 100
Refseq	XP_010937198.1	1e-117	NAC domain-containing protein 100
Refseq	XP_010937199.1	1e-117	NAC domain-containing protein 100
Refseq	XP_010937200.1	1e-117	NAC domain-containing protein 100
Refseq	XP_010937201.1	1e-117	NAC domain-containing protein 100
Refseq	XP_010937202.1	1e-117	NAC domain-containing protein 100
Swissprot	Q9FLR3	5e-94	NAC79_ARATH; NAC domain-containing protein 79
TrEMBL	A0A2H3YR36	1e-113	A0A2H3YR36_PHODC; NAC domain-containing protein 100-like
STRING	XP_008802569.1	1e-114	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2730	37	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07680.1	2e-92	NAC domain containing protein 80

Link Out ? help Back to Top
Phytozome	Spipo0G0050200

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Vidal EA,Álvarez JM,Gutiérrez RA Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function. Plant Signal Behav, 2014. 9(3): p. e28501 [PMID:24642706] Lee MH,Jeon HS,Kim HG,Park OK An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164. New Phytol., 2017. 214(1): p. 343-360 [PMID:28032643]