PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0048300
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family B3
Protein Properties Length: 218aa    MW: 23361.3 Da    PI: 7.0604
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0048300genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3543.1e-17116205399
                     EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     kvltpsd+++ g +  p ++ e+       s+tl ++d++g++ ++++iyr++ +r++lt+ W  Fv++++L +gD+vvF   ++++++ +v+++
  Spipo0G0048300 116 KVLTPSDANNGGAIFPPLDYSEKKP-----SQTLFVRDLQGNEIRFQHIYRGTHRRHFLTAHWGTFVNSKKLVAGDSVVFL--KDRSGQIFVGLR 203
                     8899999999886665555553332.....349************************************************..567888999999 PP

                     -S CS
              B3  98 rk 99 
                     r+
  Spipo0G0048300 204 RT 205
                     86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.6E-23108209IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-19112206IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.897114206IPR003340B3 DNA binding domain
SMARTSM010195.3E-6114206IPR003340B3 DNA binding domain
CDDcd100171.38E-14116200No hitNo description
PfamPF023621.5E-14116205IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MASDSAAAVA IQGIRMDPEI WEGCSGRSGV TPAVGTPGHA EEAFCPVEWE KRADDLSMSL  60
GRMADVQYLA NRSSDEVFDK IRLEPYGPDP APLPAAAGAA PEGARREEEK LVSVAKVLTP  120
SDANNGGAIF PPLDYSEKKP SQTLFVRDLQ GNEIRFQHIY RGTHRRHFLT AHWGTFVNSK  180
KLVAGDSVVF LKDRSGQIFV GLRRTGRSGG IAPSAAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-321621651270Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010245064.18e-54PREDICTED: auxin response factor 17
SwissprotQ9AV471e-42ARFV_ORYSJ; Auxin response factor 22
TrEMBLA0A1U7ZB882e-52A0A1U7ZB88_NELNU; Auxin response factor
STRINGXP_010245064.13e-53(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.11e-39auxin response factor 10
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]