PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0034200
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ERF
Protein Properties Length: 370aa    MW: 40650.7 Da    PI: 4.5254
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0034200genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63.2e-18109158255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+G+r+++ +g+W+AeIrdp++     r++lg+f +ae+Aa+a++a +++++g
  Spipo0G0034200 109 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNSAEDAARAYDAEARRIRG 158
                     69*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.854109166IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-32109167IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-21109166IPR016177DNA-binding domain
CDDcd000181.83E-30109167No hitNo description
SMARTSM003802.7E-36109172IPR001471AP2/ERF domain
PfamPF008471.4E-10110158IPR001471AP2/ERF domain
PRINTSPR003677.6E-11110121IPR001471AP2/ERF domain
PRINTSPR003677.6E-11132148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001666Biological Processresponse to hypoxia
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MCGGAILSDL IPTAKSRRVT PALLWPDLKE DSPYDSRHRK KRAPLLVEDD DFEADFREFK  60
DDSEEEEELF DSHPFAFGSS KAFLAQEGNP AVKACEFRDL SAKRKRKNQY RGIRQRPWGK  120
WAAEIRDPRK GVRVWLGTFN SAEDAARAYD AEARRIRGKK AKLNFPEGGA AATQKRAAAA  180
RANAWRASGP IPPQRSGGAA DQVSDYMSDV DSILSFVEEK QQQQQQQQGF LGSFPAPSSS  240
PAGGGRGQCF QSDQSSNTFG CSDLGWERET RTPEITSVFA EAEAVEDAGN SQGKQQESDA  300
GEEENTAAKL SEELSVFETY MKFLQIPYME GTPAEAAESL FASDATQDGE SAVDELWSFD  360
DMPLAGPVF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-21109166563ATERF1
3gcc_A9e-21109166563ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010917392.11e-108ethylene-responsive transcription factor 1
TrEMBLA0A200QR981e-104A0A200QR98_9MAGN; AP2/ERF domain
TrEMBLA0A2H3XIM21e-104A0A2H3XIM2_PHODC; ethylene-responsive transcription factor 1-like
STRINGXP_008784363.11e-105(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103938134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.23e-43related to AP2 2