PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo0G0014000

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

BES1

Protein Properties

Length: 682aa MW: 74967 Da PI: 6.5121

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo0G0014000	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	143.7	1.7e-44	55	182	1	136
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslq 95 +g+grk++ kE+E++k+RER+RRai+++++aG R++Gn++lp+raD+n+Vl+AL+reAGw+ve+DGttyr a g + ++s+ s+ + Spipo0G0014000 55 AGKGRKERDKEKERTKLRERHRRAITSRMLAGFRQYGNFPLPARADMNDVLAALAREAGWTVEADGTTYRS---------ALGPFPTRSIDSPAS 140 589*****************************************************************3.........567778888888888 PP DUF822 96 .sslkssalaspvesysaspksssfpspssldsislasaasl 136 slk+ a++s ++ +++++ ++ +sp+slds+ +a+ s Spipo0G0014000 141 aGSLKNAAVKSSLDCQAPVLMIDECLSPTSLDSVVVAERDSK 182 7899****************************99987544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	1.4E-43	56	181	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	1.71E-149	216	656	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	5.0E-161	219	649	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	1.8E-74	241	611	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.9E-48	256	270	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.9E-48	277	295	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.9E-48	299	320	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.9E-48	392	414	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.9E-48	465	484	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.9E-48	499	515	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.9E-48	516	527	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.9E-48	534	557	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.9E-48	570	592	IPR001554	Glycoside hydrolase, family 14

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0048831	Biological Process	regulation of shoot system development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 682 aa Download sequence Send to blast
EGAGDLSVSG EMNVKQDLEP SGDGQQQQPA QSQRRPRGFA ATAAAGSAGD SPGSAGKGRK 60 ERDKEKERTK LRERHRRAIT SRMLAGFRQY GNFPLPARAD MNDVLAALAR EAGWTVEADG 120 TTYRSALGPF PTRSIDSPAS AGSLKNAAVK SSLDCQAPVL MIDECLSPTS LDSVVVAERD 180 SKSDRFRNPG PIGSSDCIEA DQLMQDVHPG GHDDDFSGTP YIPVYSTLPT GVVNSYCQLV 240 DPEAVRQELR HLKSLNVDGV VVECWWGIVE GWSPQKYAWG GYRDLFNIIR EFKMKSQVVM 300 AFHESGASGS GDAPISLPKW VLEVGKDNQD IFFTDRGGRR NTECISWGVD RERVLCGRTG 360 VEVYFDFMRS FRAEFDDLFA EGLVAGVEVG LGASGELKFP SFSERMGWRY PGIGEFQCYD 420 RYLQQSLRRA AKARGHAFWA RGPDNVGHYN SQPHETGFFC ERGDYDSYYG RFFLHWYAQT 480 LVAHADAVLS LAALVFEETL LIVKIPAVYW WYRTASHAAE LTAGFHNPTN QDGYSPLFDA 540 LKKHAAAVKL VCPGVPREGD GAAVADAEGL SWQVLNAAWD RGLTVAGQNS AGGHDRESLR 600 RMLETAKPRN DPDRRHFGFF VYQQPSTFAQ RELSLSELLH FVKNMHGELA PSPALVPPAS 660 LPLSNLAACS GLHACISRKP TL

Sequence ? help Back to Top

Protein Sequence Length: 682 aa Download sequence Send to blast

EGAGDLSVSG EMNVKQDLEP SGDGQQQQPA QSQRRPRGFA ATAAAGSAGD SPGSAGKGRK  60
ERDKEKERTK LRERHRRAIT SRMLAGFRQY GNFPLPARAD MNDVLAALAR EAGWTVEADG  120
TTYRSALGPF PTRSIDSPAS AGSLKNAAVK SSLDCQAPVL MIDECLSPTS LDSVVVAERD  180
SKSDRFRNPG PIGSSDCIEA DQLMQDVHPG GHDDDFSGTP YIPVYSTLPT GVVNSYCQLV  240
DPEAVRQELR HLKSLNVDGV VVECWWGIVE GWSPQKYAWG GYRDLFNIIR EFKMKSQVVM  300
AFHESGASGS GDAPISLPKW VLEVGKDNQD IFFTDRGGRR NTECISWGVD RERVLCGRTG  360
VEVYFDFMRS FRAEFDDLFA EGLVAGVEVG LGASGELKFP SFSERMGWRY PGIGEFQCYD  420
RYLQQSLRRA AKARGHAFWA RGPDNVGHYN SQPHETGFFC ERGDYDSYYG RFFLHWYAQT  480
LVAHADAVLS LAALVFEETL LIVKIPAVYW WYRTASHAAE LTAGFHNPTN QDGYSPLFDA  540
LKKHAAAVKL VCPGVPREGD GAAVADAEGL SWQVLNAAWD RGLTVAGQNS AGGHDRESLR  600
RMLETAKPRN DPDRRHFGFF VYQQPSTFAQ RELSLSELLH FVKNMHGELA PSPALVPPAS  660
LPLSNLAACS GLHACISRKP TL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wqu_A	1e-114	221	667	12	465	Beta-amylase
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00543	DAP	Transfer from AT5G45300	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027360152.1	0.0	beta-amylase 8 isoform X1
Swissprot	Q9FH80	0.0	BAM8_ARATH; Beta-amylase 8
TrEMBL	A0A1D1YTM5	0.0	A0A1D1YTM5_9ARAE; Beta-amylase
STRING	XP_007158095.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2141	36	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45300.2	0.0	beta-amylase 2

Link Out ? help Back to Top
Phytozome	Spipo0G0014000

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]