PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0013500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family HB-other
Protein Properties Length: 386aa    MW: 42017.4 Da    PI: 8.4862
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0013500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.87.9e-081375656
                    S--HHHHHHHHHHHH..HSSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS
        Homeobox  6 tftkeqleeLeelFe..knrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56
                    +ft++++ e+e++ +  +n  p++  +  LA+k            ++ +qV +WFqNrR+ ++
  Spipo0G0013500 13 RFTPSEVMEMEACLQvsNNVIPDRGLISSLAEKFsasaersgkvVVQPKQVWNWFQNRRYAQR 75
                    699***********9655999*********************999**************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.0015781IPR001356Homeobox domain
SuperFamilySSF466893.55E-101275IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-61277IPR009057Homeodomain-like
PROSITE profilePS500719.2161377IPR001356Homeobox domain
PfamPF000462.9E-51375IPR001356Homeobox domain
CDDcd000863.93E-41375No hitNo description
PfamPF167195.6E-41118245IPR032001SAWADEE domain
CDDcd000240.00262132165No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MGRPPLGGGP VFRFTPSEVM EMEACLQVSN NVIPDRGLIS SLAEKFSASA ERSGKVVVQP  60
KQVWNWFQNR RYAQRAKVVK APGKLNVTPA ARDEPIHFRN VSSPAPSAQA KSSSDGNQME  120
FEAKSARDGA WYDVAQFISH RMFETGDPEV LVRFSGFGIE EDEWVNVRKC VRQRSLPCEA  180
SECVVVLPGD LILCFQEGKE QALYFDAHVL DAQRRRHDAR GCRCRFLVRY DHDQSEEIVP  240
LRKVCRRPET EYRLRILQAT KAHQASSPEA ATPAASQAPP QKLQRPAEAD SAEATAPRDA  300
AAAEPAGGPP PAAGRAAPSQ FQMSNTTPAA ARPVDETNEG GSPPARRQQA GLSAVQFEGP  360
GESRGKNCIK AVLPPAGSKE LLTPR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A3e-471182493134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B3e-471182493134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A3e-471182493134SHH1 SAWADEE
4iur_B3e-471182493134SHH1 SAWADEE
4iut_A3e-471182493134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B3e-471182493134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A3e-471182493134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B3e-471182493134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A3e-471182493134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B3e-471182493134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008805939.11e-156protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X3
RefseqXP_019701455.11e-156protein SAWADEE HOMEODOMAIN HOMOLOG 2
SwissprotQ8RWJ71e-127SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A1D1Y0C11e-165A0A1D1Y0C1_9ARAE; Homeobox-leucine zipper protein HAT5
STRINGGSMUA_Achr4P18450_0011e-153(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41902948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-109sequence-specific DNA binding transcription factors;sequence-specific DNA binding