PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0008900
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family Trihelix
Protein Properties Length: 406aa    MW: 46635.7 Da    PI: 7.6993
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0008900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix42.12.3e-133493987
        trihelix 39 rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
                    +e+g++r+ k+C+ek+enl k+ykk+keg+ +r+  + +++++f+qlea
  Spipo0G0008900  3 EEHGYQRTGKKCREKLENLYKYYKKTKEGKAGRH--DGKHYRFFRQLEA 49
                    69*****************************985..5557*******85 PP
2trihelix102.14.4e-32256340186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     rW+++ev +Li++r+ meer++ g+ k +lW+e+s+km++ g++rs+k+Ckekwen+nk+++k+k+ +kkr +ess+tcpy+++l+
  Spipo0G0008900 256 RWPDREVTCLIQLRTAMEERFQGGCPKSTLWDEISAKMASSGYNRSAKRCKEKWENINKYFRKTKKCNKKR-KESSRTCPYYKHLD 340
                     8*********************************************************************8.89999*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.5E-8350No hitNo description
PROSITE profilePS500907.073249313IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.7E-4250312IPR009057Homeodomain-like
SMARTSM007173.1E-4253315IPR001005SANT/Myb domain
CDDcd122031.08E-25255317No hitNo description
PfamPF138371.1E-21255341No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010200Biological Processresponse to chitin
GO:0046621Biological Processnegative regulation of organ growth
GO:0048442Biological Processsepal development
GO:0048498Biological Processestablishment of petal orientation
GO:0090428Biological Processperianth development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MAEEHGYQRT GKKCREKLEN LYKYYKKTKE GKAGRHDGKH YRFFRQLEAL YGDGSNNPIA  60
DSTNVADYSV FHMLTGDSSL APSSQEAFRA PRVYENVSLS NSSGFDSWSS EDDANATAMA  120
SSDRQNGERK DGRGSKRGRK SWRAKMREFV DQQLERFMAV QEAWLEKMLT TLETKEKDRI  180
SREEERRKRE AASLEEEHKL WAKERAWIEA RDSALIEALE RLSGWEQKPP SPDDLVSMDA  240
IEDSDYRNEQ DCDTRRWPDR EVTCLIQLRT AMEERFQGGC PKSTLWDEIS AKMASSGYNR  300
SAKRCKEKWE NINKYFRKTK KCNKKRKESS RTCPYYKHLD TLYSSQGSDH SCRENQYGGE  360
ATAAVVVPAL DGAADPANEE RYFPFLVDGS TLWEGSVLDG GPCRR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002277307.21e-116PREDICTED: trihelix transcription factor PTL
TrEMBLA0A200Q6411e-114A0A200Q641_9MAGN; SANT/Myb domain
TrEMBLA0A438JRZ51e-116A0A438JRZ5_VITVI; Trihelix transcription factor PTL
TrEMBLF6HKI21e-114F6HKI2_VITVI; Uncharacterized protein
STRINGVIT_08s0007g03820.t011e-115(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2292266
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.18e-44Trihelix family protein