PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo0G0004900

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

MYB_related

Protein Properties

Length: 223aa MW: 24237.4 Da PI: 8.7559

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo0G0004900	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.6	7.8e-15	156	201	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT+eE+ ++++ +++G+g W++I+r + k+Rt+ q+ s+ qk++ Spipo0G0004900 156 PWTEEEHRSFLRGLQKHGSGAWRKISRDFVKTRTPSQISSHAQKFR 201 8*******************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.382	149	205	IPR017930	Myb domain
SuperFamily	SSF46689	8.97E-17	150	206	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.8E-15	152	204	IPR006447	Myb domain, plants
SMART	SM00717	2.5E-9	153	203	IPR001005	SANT/Myb domain
CDD	cd00167	4.24E-10	156	200	No hit	No description
Pfam	PF00249	1.9E-11	156	200	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.7E-12	156	196	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MTNSGTASSS RTWADPPMLP TAPPASQPAA LIPSTPEEAL SQPAVIDPTL QEFADALWDD 60 RRQPTAMQMP AEDLGRSFIH SLFDIDGGIV APRPRIGGLF DLHNMQVPLP YAAAAAAAAA 120 AATTNCVLPG GALMEPQTSC GGAWWVRDYK RKNPVPWTEE EHRSFLRGLQ KHGSGAWRKI 180 SRDFVKTRTP SQISSHAQKF RMRQRKPAEE RGRSSILDIT EG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP842	30	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38090.1	8e-26	MYB family protein

Link Out ? help Back to Top
Phytozome	Spipo0G0004900