PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim12g099220.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRAS
Protein Properties Length: 576aa    MW: 66357.1 Da    PI: 5.2741
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim12g099220.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS285.61.4e-871905601374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn.sseelaalklfsevsP 89 
                         lve Ll+ Ae v ++    a  lL++  +l+ ++g p++Rl+ yf +AL++r+   +++++ k l  ++ ++ + + ++++a ++ ++  P
  Sopim12g099220.0.1 190 LVERLLASAEKVGEKVYDIAIDLLNECDKLSYKTGHPVERLVYYFSRALRERVDIeTGKNCTKGLGIRRMRDLQeTLRSINACTIAVQDMP 280
                         57899************************************************876999******98888876558888999999****** PP

                GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                         + ++  ++  qaIle ve+++++Hi+D++i++G+QW  L+qaLa++ ++   l++T++ + +  s++++eetg+rL +fA++l+ p+ f++
  Sopim12g099220.0.1 281 MCEVVKFAGIQAILENVESSKKIHIVDLEIKMGVQWTILMQALATQCSNLEYLKVTALIDVQ--SRTNVEETGKRLMSFAKSLHFPLCFKI 369
                         ************************************************************66..*************************** PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                         ++++++ dl+ e+L+++p+E+laV +++ l ++     + +++ d ++ ++k+l+P+++vv+e ea++ns+ F++rf+eal y+ a fd +
  Sopim12g099220.0.1 370 VMVEDIFDLKREDLDIDPEESLAVYSQFLLSNMI----THQDRLDFLMGFIKGLNPRIMVVAEVEANLNSPVFVNRFIEALFYHGAYFDLF 456
                         ****************************999998....555567779******************************************** PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlg 361
                         e  + +++++r+ +E+e++   i+n++a+eg+er++rh t e Wre ++++G+ ++++s++   qak++++k+  ++ +++e +++ +++g
  Sopim12g099220.0.1 457 EDCMRNNESTRNAMEEEVMWHGIRNIIANEGEERTMRHVTIELWREYFKRFGMVEMKMSDSSLYQAKTVVEKFTgKNSFTLEMNENFVTIG 547
                         ****9999******************************************************************9999************* PP

                GRAS 362 WkdrpLvsvSaWr 374
                         Wk+ pL s+SaW+
  Sopim12g099220.0.1 548 WKGTPLNSLSAWK 560
                         ************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.677164539IPR005202Transcription factor GRAS
PfamPF035145.0E-85190560IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MEDASGTSEF FLVKESLSSS SGTIRRFYTG FCFWRQHVCC CLASKLIQTN MEKSIIWPFY  60
EPEEKTNSMQ EQNEQYSVKL DDWDFDVVDK TTTILSIKEA TDDNKRANNS LISSLNILKD  120
FGNGFRKLKG QKIDVAQISE NECTSSVCKL SAEEILRFGG QKFMQRIEFD HTFVDSLCSL  180
SEEESRSVML VERLLASAEK VGEKVYDIAI DLLNECDKLS YKTGHPVERL VYYFSRALRE  240
RVDIETGKNC TKGLGIRRMR DLQETLRSIN ACTIAVQDMP MCEVVKFAGI QAILENVESS  300
KKIHIVDLEI KMGVQWTILM QALATQCSNL EYLKVTALID VQSRTNVEET GKRLMSFAKS  360
LHFPLCFKIV MVEDIFDLKR EDLDIDPEES LAVYSQFLLS NMITHQDRLD FLMGFIKGLN  420
PRIMVVAEVE ANLNSPVFVN RFIEALFYHG AYFDLFEDCM RNNESTRNAM EEEVMWHGIR  480
NIIANEGEER TMRHVTIELW REYFKRFGMV EMKMSDSSLY QAKTVVEKFT GKNSFTLEMN  540
ENFVTIGWKG TPLNSLSAWK FHKRSTFHIA NYLTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-3722356036375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755240.0HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004253154.10.0DELLA protein RGL1-like
TrEMBLK4DHU30.0K4DHU3_SOLLC; Uncharacterized protein
STRINGSolyc12g099220.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34272149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-51RGA-like 1