PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim12g088610.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 85aa    MW: 9910.95 Da    PI: 10.2637
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim12g088610.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33.1e-171153346
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                         W +eEdell ++vkq+G+++W  I + ++  R++k+c++rw +
  Sopim12g088610.0.1 11 YWNPEEDELLQKLVKQHGTKNWFVIGQLIP-DRSGKSCRLRWCD 53
                        6*****************************.***********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.808159IPR017930Myb domain
SMARTSM007176.1E-13857IPR001005SANT/Myb domain
PfamPF002496.7E-161154IPR001005SANT/Myb domain
SuperFamilySSF466892.58E-161159IPR009057Homeodomain-like
CDDcd001676.57E-131251No hitNo description
Gene3DG3DSA:1.10.10.602.4E-161256IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MNKKCQKKCL YWNPEEDELL QKLVKQHGTK NWFVIGQLIP DRSGKSCRLR WCDQLSSKWI  60
INLLLLKKMI LLSILMPNLI INGT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755241e-140HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010691674.13e-19PREDICTED: transcription factor MYB44-like
RefseqXP_023732430.18e-19transcription factor MYB44-like
SwissprotO231601e-18MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A3Q7JCQ08e-53A0A3Q7JCQ0_SOLLC; Uncharacterized protein
STRINGSolyc12g088610.1.11e-53(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA3054122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.18e-19myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]