PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim12g056860.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bZIP

Protein Properties

Length: 349aa MW: 39559.3 Da PI: 7.1157

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim12g056860.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.8	7.4e-11	64	104	3	43
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 ++k++rr+++NReAAr+sR RKka++++Le+ +L + + Sopim12g056860.0.1 64 SDKVQRRLAQNREAARKSRMRKKAYVQQLEKSNLKLAQLEM 104 68****************************86655555544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.7E-4	62	125	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.105	64	108	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.3E-7	65	104	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.38E-7	66	102	No hit	No description
Gene3D	G3DSA:1.20.5.170	4.9E-8	66	109	No hit	No description
PROSITE pattern	PS00036	0	69	84	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	6.0E-29	153	225	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MGIFEPFHHM SMWEDAFRGD IMPSVGACMI TPANDRADDK SGYTSSDQLI PSGSEDNQAG 60 KSISDKVQRR LAQNREAARK SRMRKKAYVQ QLEKSNLKLA QLEMELERAR QQGLYILGSN 120 GNMGLSSTIN PGIAAFEMEY SLWVEEQQKK NVELRNILQS HVSEMELQLL VETVLNHYYN 180 LFRIKADAAK ADVFYLMSGM WRTSVERFFL WIGGFKPSEL INIVMPQLEP LSDQQIVKIC 240 NLRHCCQQAE DALTQGMDKL QQTLAQNILT MTTGMGSYSS QMVSSMEKLE ALESFVNQAD 300 HLRQQTLQQM SLVLTTRQSA RGLLAFGEYL QRLRALSSLW AARPREPT*

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MGIFEPFHHM SMWEDAFRGD IMPSVGACMI TPANDRADDK SGYTSSDQLI PSGSEDNQAG  60
KSISDKVQRR LAQNREAARK SRMRKKAYVQ QLEKSNLKLA QLEMELERAR QQGLYILGSN  120
GNMGLSSTIN PGIAAFEMEY SLWVEEQQKK NVELRNILQS HVSEMELQLL VETVLNHYYN  180
LFRIKADAAK ADVFYLMSGM WRTSVERFFL WIGGFKPSEL INIVMPQLEP LSDQQIVKIC  240
NLRHCCQQAE DALTQGMDKL QQTLAQNILT MTTGMGSYSS QMVSSMEKLE ALESFVNQAD  300
HLRQQTLQQM SLVLTTRQSA RGLLAFGEYL QRLRALSSLW AARPREPT*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269\|PubMed:12953119}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004252551.1	0.0	transcription factor TGA1
Swissprot	Q93ZE2	1e-149	TGA7_ARATH; Transcription factor TGA7
TrEMBL	M1BF04	0.0	M1BF04_SOLTU; Uncharacterized protein
STRING	Solyc12g056860.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA780	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77920.1	1e-151	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]