PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim12g056790.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 591aa    MW: 66500.3 Da    PI: 4.6555
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim12g056790.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.41.7e-50231492128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                         ppGfrFhPtdeelv +yLkkk+ gk++ l ++i+e+d+yk+eP+dLp  +k+k+++++w+fFs+rd+ky++g r+nr tk+g Wk tgkd+
  Sopim12g056790.0.1  23 PPGFRFHPTDEELVLYYLKKKICGKRILL-DAIAETDVYKWEPEDLPdlSKLKTGDRQWFFFSPRDRKYPNGARANRGTKRGHWKVTGKDR 112
                         9*************************999.99**************96559999************************************* PP

                 NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++ ++++vglkktLvfykgrap ge+tdWvmhey++
  Sopim12g056790.0.1 113 IIMC-NSRAVGLKKTLVFYKGRAPVGERTDWVMHEYTM 149
                         ****.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.72E-5917172IPR003441NAC domain
PROSITE profilePS5100555.15622172IPR003441NAC domain
PfamPF023658.9E-2623148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MKMFELSDSD SFAVFASSKN VFPPGFRFHP TDEELVLYYL KKKICGKRIL LDAIAETDVY  60
KWEPEDLPDL SKLKTGDRQW FFFSPRDRKY PNGARANRGT KRGHWKVTGK DRIIMCNSRA  120
VGLKKTLVFY KGRAPVGERT DWVMHEYTMD EEELKKCQNA QDYYALYKVF KKSGSGPKNG  180
EQYGAPFREE EWADDECPSA KGFVHQDNST NHVIEAPSVD GGLEELLNPV LMEPLSVDYD  240
YAVEQLVQEE DTRSTLLYHS AKEVNFPHRS AVIAPAKESF DLTQSGTSQR QLHEALEVTS  300
APVIYEQQPH VVEEDFLEMD DLLGPEPSTQ NFDNLGPCVQ NFDEAGQSGQ NFDMPAGNFE  360
DLPFDYFDGL AEFDLYHDAS LLDDVRTTEV GQNTEPHMNN LVNGSVNPAS TTYINTFQHE  420
MMNNQPMYLN NSEQISNQLW VHDQRFNISY PSEANQLVAP PATSGVVYDS ILANHPMDAN  480
QNQLPNQDEG TPSWLTSQLW AFVDSIPTAP AIAAESPVVN SAFKRMSSFS KMRINARNMN  540
VAAAGNTATS RSSRYSKNGL FYFSFVGILC AILCVLLGTF VDILRRPISS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-462214915140Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0135490.0BT013549.1 Lycopersicon esculentum clone 132273F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304297.10.0stress-related NAC1
TrEMBLA0A3Q7JB860.0A0A3Q7JB86_SOLLC; Uncharacterized protein
STRINGSolyc12g056790.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32122451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.11e-133NAC domain containing protein 17