PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim12g044390.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 144aa    MW: 16152.4 Da    PI: 9.7698
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim12g044390.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.5e-192878155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        + y+GVr ++ +g+Wv+eIr p++   + r++lg++ t+e+Aa+a++ a+++++g
  Sopim12g044390.0.1 28 PVYRGVRMRS-WGKWVSEIRQPRK---KSRIWLGTYPTPEMAARAHDVAALSIKG 78
                        68*****998.**********843...6***********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.2E-142878IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.2E-322987IPR001471AP2/ERF domain
PROSITE profilePS5103223.2482986IPR001471AP2/ERF domain
SMARTSM003801.5E-362992IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-222987IPR016177DNA-binding domain
PRINTSPR003672.5E-103041IPR001471AP2/ERF domain
CDDcd000181.84E-313086No hitNo description
PRINTSPR003672.5E-105268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MAELVQSSSI SVSKTEEKEK RTRDETYPVY RGVRMRSWGK WVSEIRQPRK KSRIWLGTYP  60
TPEMAARAHD VAALSIKGNS AILNFPQLVE SLPRPASISP RDVQAAAAMD ELNSSVSSTL  120
RHSESMETED QLGQIIEIYK VKF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1830871573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755240.0HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004252501.11e-101dehydration-responsive element-binding protein 3
SwissprotQ9LYD35e-49DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A3Q7JW807e-91A0A3Q7JW80_SOLLC; Uncharacterized protein
STRINGSolyc12g044390.1.11e-101(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-48ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]