PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim12g019900.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 191aa    MW: 21561.9 Da    PI: 7.4467
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim12g019900.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.63.8e-10942337
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37
                        rW + Edell+++++++G ++W+ I++ ++  Rt 
  Sopim12g019900.0.1  9 RWNPGEDELLKKLIEEHGAKNWSFISQLIP-SRTM 42
                        9*****************************.9995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.01E-8341IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.1E-10742IPR009057Homeodomain-like
PROSITE profilePS500907.201741IPR017877Myb-like domain
PfamPF002491.4E-8942IPR001005SANT/Myb domain
CDDcd001674.23E-10944No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MKIGQIKHRW NPGEDELLKK LIEEHGAKNW SFISQLIPSR TMSEDLTFEK PQLPLQRSSS  60
VGTCINLGSP SKSHLSNLEF SRFPQLCLYP PTIPLCQNLP HSTYSPVIPY PFTSLTFYES  120
YLSNLCISRY PWLSLYPYIA QLSEIFPFSS GSLVLPSPST TLILSLSGFK PIKNLNPINR  180
IEQEDEVTLV *
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755240.0HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015060233.11e-52transcription factor MYB44-like
TrEMBLA0A3Q7JUC91e-133A0A3Q7JUC9_SOLLC; Uncharacterized protein
STRINGSolyc12g019900.1.11e-134(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA3025322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.13e-08myb domain protein 73