PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim12g010170.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bHLH

Protein Properties

Length: 388aa MW: 40051.2 Da PI: 6.5719

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim12g010170.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.6	8e-12	197	242	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y++ Lq Sopim12g010170.0.1 197 HSIAERLRRERIAERMKSLQELVPNA-----NKTDKASMLDEIIDYVRFLQ 242 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	8.65E-13	190	246	No hit	No description
SuperFamily	SSF47459	1.06E-16	190	252	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.193	192	241	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.7E-16	194	251	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.4E-9	197	242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.0E-13	198	247	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048767	Biological Process	root hair elongation
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MQAMNSFQST GENGASSGEH MSHSHFDPSS SHDDFLQQIL SSVPSSSPWP EISGDGHPYN 60 FDDHQSTLLA SKLRQHQING GTSAAAAAKA LMLQQQLLLS RGIAGNGGSG INGDQNDDGL 120 NSGNDISVQA LYNGFAGSLG QTSNQSQHFH HSQAQSFGAP AASLSMNQTP AASGSAGGAQ 180 PKQQKVRARR GQATDPHSIA ERLRRERIAE RMKSLQELVP NANKTDKASM LDEIIDYVRF 240 LQLQVKVLSM SRLGGAAAVA PLVADRSSEG GGDCVQGNVG RGGSNGTTSS ANNDSSMTMT 300 EHQVAKLMEE DMGSAMQYLQ GKGLCLMPIS LATAISTSTC HSMKPNNPLL LAGGSAINGV 360 GETGGGPSSP TLSASTVQSA TMGNGGT*

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MQAMNSFQST GENGASSGEH MSHSHFDPSS SHDDFLQQIL SSVPSSSPWP EISGDGHPYN  60
FDDHQSTLLA SKLRQHQING GTSAAAAAKA LMLQQQLLLS RGIAGNGGSG INGDQNDDGL  120
NSGNDISVQA LYNGFAGSLG QTSNQSQHFH HSQAQSFGAP AASLSMNQTP AASGSAGGAQ  180
PKQQKVRARR GQATDPHSIA ERLRRERIAE RMKSLQELVP NANKTDKASM LDEIIDYVRF  240
LQLQVKVLSM SRLGGAAAVA PLVADRSSEG GGDCVQGNVG RGGSNGTTSS ANNDSSMTMT  300
EHQVAKLMEE DMGSAMQYLQ GKGLCLMPIS LATAISTSTC HSMKPNNPLL LAGGSAINGV  360
GETGGGPSSP TLSASTVQSA TMGNGGT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	201	206	RLRRER

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975524	0.0	HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004251756.1	0.0	transcription factor bHLH66 isoform X1
Swissprot	Q9ZUG9	5e-90	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A3Q7J4B1	0.0	A0A3Q7J4B1_SOLLC; Uncharacterized protein
STRING	Solyc12g010170.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3759	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	9e-67	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]