PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim12g007300.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | B3 | ||||||||
Protein Properties | Length: 236aa MW: 26592.6 Da PI: 10.5455 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 41.6 | 2.2e-13 | 128 | 217 | 1 | 81 |
EEEE-..-HHHHT.T-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlks.grlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 f+k+lt+sdv+ + gr+ l+++++++ +++ ++++ ++ d+ g+ ++k++ +++ ++y+l + Wk+Fv+++gLk+ D v+ Sopim12g007300.0.1 128 FVKQLTNSDVNGHqGRFLLSNEYVRNQllpllnekSEDLTTGISVKTFDPMGKYCNMKFKTWGNHKTYLLLGSWKQFVQEHGLKVSDCVT 217 99********9987999*******888***9987633334777888899***999999999**************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.0E-17 | 128 | 228 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.29E-18 | 128 | 224 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.06E-14 | 128 | 231 | No hit | No description |
Pfam | PF02362 | 8.8E-10 | 128 | 217 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0069 | 128 | 233 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.643 | 129 | 235 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MVKLEKEDIE AALLLSWLKY VPVFPKKEEK SKRKHRRFIK NETPEIQIPK RVKNSPSASG 60 FEVYGAGNPK RVRLSSNSNG GQAASSSRNS NPVPKRGRVS PSNLPGSLPK FPPIENLTTL 120 IGQCSNPFVK QLTNSDVNGH QGRFLLSNEY VRNQLLPLLN EKSEDLTTGI SVKTFDPMGK 180 YCNMKFKTWG NHKTYLLLGS WKQFVQEHGL KVSDCVTGWM FRHNRTGELC FALTW* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975524 | 0.0 | HG975524.1 Solanum lycopersicum chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004251622.1 | 1e-175 | uncharacterized protein LOC101254974 | ||||
TrEMBL | A0A3Q7J2E9 | 1e-173 | A0A3Q7J2E9_SOLLC; Uncharacterized protein | ||||
STRING | Solyc12g007300.1.1 | 1e-174 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6430 | 12 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G03170.1 | 3e-27 | B3 family protein |