PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim12g006280.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

G2-like

Protein Properties

Length: 175aa MW: 20316.2 Da PI: 9.9449

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim12g006280.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	93	2.4e-29	29	82	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH+ F++ v++LGG +kAtPk+i+++m +kgL ++hvkSHLQ+YR Sopim12g006280.0.1 29 PRLRWTPQLHHLFIQSVQNLGGRNKATPKRIVQMMAIKGLKISHVKSHLQMYRN 82 9****************************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.0E-25	28	84	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.4E-22	29	82	IPR006447	Myb domain, plants
SuperFamily	SSF46689	2.15E-13	29	84	IPR009057	Homeodomain-like
Pfam	PF00249	5.5E-7	30	81	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MEIFLMSQEM MRKSKKMKEV RKYKKSLAPR LRWTPQLHHL FIQSVQNLGG RNKATPKRIV 60 QMMAIKGLKI SHVKSHLQMY RNMREHPSLH VVMQDFNLSS PMHVSKILGE HAQNSRKQKE 120 SGSQNGENIH YNDFQEVEGS LSSGMTKEEE EDNDGEIYEY RETSTQINLD LTLS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-17	30	84	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-17	30	84	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-17	30	84	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-17	30	84	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-17	30	84	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-17	30	84	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-17	30	84	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-17	30	84	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-17	30	84	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-17	30	84	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-17	30	84	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-17	30	84	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975524	1e-81	HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004251553.1	1e-127	putative Myb family transcription factor At1g14600 isoform X2
TrEMBL	A0A3Q7JRD0	1e-126	A0A3Q7JRD0_SOLLC; Uncharacterized protein
STRING	Solyc12g006280.1.1	1e-126	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9459	13	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	9e-25	G2-like family protein