PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim12g006170.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | WRKY | ||||||||
Protein Properties | Length: 416aa MW: 46185.6 Da PI: 7.7401 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99 | 2.9e-31 | 56 | 112 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +DgynWrKYGqK vkg+ef+rsYY+Ct+++C +kk+vers+ d+++++i+Y g+H+h+ Sopim12g006170.0.1 56 EDGYNWRKYGQKLVKGNEFTRSYYKCTFPNCLAKKQVERSH-DGHITDIHYIGKHEHP 112 7****************************************.***************8 PP | |||||||
2 | WRKY | 100.4 | 1.1e-31 | 234 | 291 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dg +WrKYGqK vkg+++prsYYrC+ agCpvkk+ver+++dpk+v++tYeg+H h+ Sopim12g006170.0.1 234 NDGQRWRKYGQKIVKGNPNPRSYYRCSVAGCPVKKHVERASHDPKLVITTYEGQHVHD 291 8*******************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 21.62 | 50 | 114 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.2E-26 | 51 | 112 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-24 | 53 | 112 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.6E-34 | 55 | 113 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-23 | 56 | 112 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.2E-34 | 219 | 293 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.48E-28 | 225 | 293 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 34.773 | 228 | 293 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.3E-36 | 233 | 292 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.1E-25 | 234 | 290 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 416 aa Download sequence Send to blast |
MEVFVSQSDL QRVSYTIKRE KALDKLQPRR NPDTSAHGLT SDQGTTLLKA PEKPSEDGYN 60 WRKYGQKLVK GNEFTRSYYK CTFPNCLAKK QVERSHDGHI TDIHYIGKHE HPETLSVPQM 120 SPEYVLPLQM KRPDIPIITA LEAEGEKSST PRETCEPSKP PEAPLALAIV SACDSVKVTP 180 LKRYKLENEV DKGDSADSKK QKKDTVATDD TPPVKSHSEP RHIVQTVSEV DIINDGQRWR 240 KYGQKIVKGN PNPRSYYRCS VAGCPVKKHV ERASHDPKLV ITTYEGQHVH DFPTSRPISQ 300 ISVAPDAGTA GIREDSRTES GEKKHVVESK TESGEMKHIR ESKTEAGETK HVKESKAESG 360 ENKHVGESKT ESDGNKHVEE SKPELVGNKH VGESISESGE NKHVGLDMAV HIGAN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 8e-32 | 56 | 293 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 8e-32 | 56 | 293 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF313452 | 0.0 | AF313452.1 Solanum dulcamara thermal hysteresis protein STHP-64 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004251542.1 | 0.0 | WRKY transcription factor 1 isoform X2 | ||||
Refseq | XP_010313681.1 | 0.0 | WRKY transcription factor 1 isoform X2 | ||||
Swissprot | Q93WV0 | 6e-69 | WRK20_ARATH; Probable WRKY transcription factor 20 | ||||
TrEMBL | A0A3Q7J1V6 | 0.0 | A0A3Q7J1V6_SOLLC; Uncharacterized protein | ||||
STRING | Solyc12g006170.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4558 | 22 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26640.1 | 3e-72 | WRKY family protein |