PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim11g044560.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bZIP

Protein Properties

Length: 400aa MW: 44135.7 Da PI: 8.9001

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim11g044560.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.6	4e-11	321	376	5	59
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke.leelkkevakl 59 +r +r++kNRe+A rsR RK+a++ eLe +v++L++ ++L+k+ +e ++k+ +l Sopim11g044560.0.1 321 RRRKRMIKNRESAARSRDRKQAYTLELEAEVAKLKEIKQELQKKqAEFIEKQKNQL 376 689************************************99765145555555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.2E-12	317	382	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.6E-12	319	376	No hit	No description
PROSITE profile	PS50217	10.151	319	364	IPR004827	Basic-leucine zipper domain
CDD	cd14707	1.43E-22	321	375	No hit	No description
Pfam	PF00170	2.5E-9	321	379	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.19E-9	321	369	No hit	No description
PROSITE pattern	PS00036	0	324	339	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MSEIFWMIYQ QIGKNHAYSL QNLYLPKRIL FVVTMGSYLN FKNFADTSQP ESSGNNSNSF 60 LAQQSSIYSF TFDELQNTCG LGKDFGSMNM DDLLKNIEES QALSSSAALG GNLQRQGSLT 120 LPRTLSQKTV DEVWRDFQKE SVVANDASGT GGSNFGQRES TLGEMTLEEF LVRAGAVQED 180 MQPAGYSNDV TFASGFTQPS CSVTIAFQQA TQNPGHQIAA NNIFNVVSTT TSSPQQPLFP 240 KQTTVEFASP MQLGSPGKRL PMSNPSANTS SVMQGGVMTM PVKGVSPGNL DTSSLSPSPY 300 ACGEGGRGRR SCTSFEKVVE RRRKRMIKNR ESAARSRDRK QAYTLELEAE VAKLKEIKQE 360 LQKKQAEFIE KQKNQLLEKM NVPWENKLIC LRRTVTGPW*

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MSEIFWMIYQ QIGKNHAYSL QNLYLPKRIL FVVTMGSYLN FKNFADTSQP ESSGNNSNSF  60
LAQQSSIYSF TFDELQNTCG LGKDFGSMNM DDLLKNIEES QALSSSAALG GNLQRQGSLT  120
LPRTLSQKTV DEVWRDFQKE SVVANDASGT GGSNFGQRES TLGEMTLEEF LVRAGAVQED  180
MQPAGYSNDV TFASGFTQPS CSVTIAFQQA TQNPGHQIAA NNIFNVVSTT TSSPQQPLFP  240
KQTTVEFASP MQLGSPGKRL PMSNPSANTS SVMQGGVMTM PVKGVSPGNL DTSSLSPSPY  300
ACGEGGRGRR SCTSFEKVVE RRRKRMIKNR ESAARSRDRK QAYTLELEAE VAKLKEIKQE  360
LQKKQAEFIE KQKNQLLEKM NVPWENKLIC LRRTVTGPW*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the ABA-responsive element (ABRE). Could participate in abscisic acid-regulated gene expression.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by abscisic acid (ABA) and cold. {ECO:0000269\|PubMed:10636868}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB675692	0.0	AB675692.1 Solanum lycopersicum SlABF4 mRNA for ABA responsive transcription factor, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001239043.2	0.0	ABA responsive transcription factor
Refseq	XP_010313017.1	0.0	ABA responsive transcription factor isoform X2
Swissprot	Q9M7Q5	2e-83	AI5L4_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 4
TrEMBL	A0A3Q7IWK8	0.0	A0A3Q7IWK8_SOLLC; Uncharacterized protein
STRING	Solyc11g044560.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA776	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49720.1	1e-67	abscisic acid responsive element-binding factor 1

Publications ? help Back to Top
Fernando VCD,Al Khateeb W,Belmonte MF,Schroeder DF Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions. Plant Mol. Biol., 2018. 97(1-2): p. 149-163 [PMID:29680877]