PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim10g080260.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 698aa    MW: 76463.8 Da    PI: 7.2283
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim10g080260.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.6e-07279299526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C+ f++ G C++Gd C +aHg
  Sopim10g080260.0.1 279 PCPEFRK-GACQRGDMCEYAHG 299
                         8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.71E-1617152IPR020683Ankyrin repeat-containing domain
PfamPF127966.7E-954128IPR020683Ankyrin repeat-containing domain
SMARTSM002480.145989IPR002110Ankyrin repeat
CDDcd002045.26E-1359137No hitNo description
Gene3DG3DSA:1.25.40.203.7E-1559140IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.9959135IPR020683Ankyrin repeat-containing domain
SMARTSM002480.005394126IPR002110Ankyrin repeat
PROSITE profilePS5008811.00794129IPR002110Ankyrin repeat
SMARTSM003562.0E-5274300IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.568279301IPR000571Zinc finger, CCCH-type
PfamPF006429.2E-5279299IPR000571Zinc finger, CCCH-type
SMARTSM0035654309332IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MTMSNSTIET EDTFASLLEL AANDDIEAFK IWIERDLASI HEVGLWYGRQ KGSKQMVLDH  60
RTPLMVAATY GSIDALKQIL SLPEVDVNRS CGHDKSTALH CAASGGSLNA AEAVKLLLGA  120
GADPHSKDIN GHYPIDVIVV SPNFHPVKSC LESLLMTSTI GDCKLRVSVS TSSSSPPRSP  180
SPGNRSPYSA SDSTFSPKSA KSSDLPSYSI PEKKEYPVDP SLPDIKNDIY SSDEFRMFSF  240
KIRPCSRAYS HDWTECPFLH PGENARRRDP RKYHYSCVPC PEFRKGACQR GDMCEYAHGV  300
FECWLHPAQY RTRLCKDGID CNRRVCFFAH KQDDLRPLYV STGSAVPSPC GNSAAVNAMD  360
FAAAMGLIPG SPSSVSVMSP SPFTPPVSPS ANGISSMGWA QRNAPPLHLP GSFVHSSRLW  420
SSLSARGIPA ADLSTCPDFD VQRQQFLNEF SCLSQRNSMS SDSLNHSVRP MTFTRANLED  480
YFPAESSSPR FSDRTVAQSV YSPTHKSAVC SPFQQQQQNL LSPINTNFSP RNIDNPLLQA  540
SFGVPSSGKM SPRAMEPISP RNSRVSILAQ RDRQQQFRSL SSRDLGSNVS AIVGSPTDTW  600
LKWGTDMGKP DWAVNTEELG RLRQSSSFKL ANNGKEPDLS WVQSLVKESP PEMMKDKCVR  660
HVSEPELTGA GADLGEGSTS HSQIDQLSAW METKNTN*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755220.0HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004249271.10.0zinc finger CCCH domain-containing protein 24
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A3Q7IKM20.0A0A3Q7IKM2_SOLLC; Uncharacterized protein
STRINGSolyc10g080260.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8832488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]