PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim10g078670.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bZIP
Protein Properties Length: 488aa    MW: 55515.1 Da    PI: 6.742
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim10g078670.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.38.9e-10195234541
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 
                         k  rr+++NReAAr+sR RKka+i++Le    + ++Le+e
  Sopim10g078670.0.1 195 KTLRRLAQNREAARKSRIRKKAYIQQLESsriRLAQLEQE 234
                         788************************9633355555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.3E-7188238No hitNo description
SMARTSM003383.4E-10191269IPR004827Basic-leucine zipper domain
PfamPF077161.5E-7192237IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.151193237IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.19E-7195238No hitNo description
CDDcd147088.17E-21195247No hitNo description
PROSITE patternPS000360198213IPR004827Basic-leucine zipper domain
PfamPF141443.0E-29285359IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MGLQSHENQI TFGNHDHQFH QQQQQTQHQH QHQQLLFQNN SDQRSNADQI SFGMLHQSSS  60
VIPENFINKE SSSTGGYDLG ELDDQALFLY LDAQDPSSNH DQIQNNSEMM RPPTLNIFPS  120
QPMHVEPSST KGNTGFVSSG SEKSSEPSIM ELSKSKNNVL STSSGPEPKI PKREWNRKGQ  180
NSGSEQNAPK TTDHKTLRRL AQNREAARKS RIRKKAYIQQ LESSRIRLAQ LEQELQRARS  240
QGFHFAGTLL GGDQGLPNNI ANMTSEAAAF DMEYSRWLEE HHRLMCELRN AVTEHFPEND  300
LRIYVENCVT HYDEMMNLKS ILLKTDVFHL ISGMWRTPAE RCFIWMGDFR PSELIKIILS  360
QIEPLTEQQF VGICGLQQST QEAEEALSQG LENLNQSVSD TIVSDALLAN CPQNMANYMG  420
QMAIAINKLS TIEGFVRQAD NLRHQTIHRL HQILTSRQAA RCFLAIAEYF HRLRALSSLW  480
VARPRHE*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00491DAPTransfer from AT5G06839Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004249162.10.0bZIP transcription factor TGA10-like
SwissprotQ52MZ20.0TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLA0A3Q7IKI10.0A0A3Q7IKI1_SOLLC; Uncharacterized protein
STRINGSolyc10g078670.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22792145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.31e-180bZIP family protein