PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim10g077110.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C2H2 | ||||||||
Protein Properties | Length: 373aa MW: 42852.8 Da PI: 7.8373 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.4 | 2.5e-05 | 65 | 85 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cg +F + +Lk+H+++H Sopim10g077110.0.1 65 CEECGATFQKPAHLKQHLQSH 85 *******************99 PP | |||||||
2 | zf-C2H2 | 17.7 | 9.6e-06 | 91 | 115 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ dC s++rk++L rH+ +H Sopim10g077110.0.1 91 FVCHidDCQSSYRRKDHLSRHLLLH 115 89********************998 PP | |||||||
3 | zf-C2H2 | 14.1 | 0.00014 | 120 | 145 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++Cp C+ +Fs + n++rH + H Sopim10g077110.0.1 120 FECPvdGCKSTFSFQGNMTRHVKEmH 145 89********************9988 PP | |||||||
4 | zf-C2H2 | 19.9 | 2e-06 | 159 | 183 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ Cgk+F+ s L++H +H Sopim10g077110.0.1 159 YVCSeaGCGKVFKYASKLRKHEDSH 183 99*******************9888 PP | |||||||
5 | zf-C2H2 | 17.7 | 1e-05 | 250 | 274 | 2 | 23 |
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC+ dC +Fs++snL +Hi+ H Sopim10g077110.0.1 250 KCEfqDCLHTFSSRSNLAQHIKAvH 274 79999****************9888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 26 | 19 | 41 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 7.45E-10 | 61 | 115 | No hit | No description |
SMART | SM00355 | 0.019 | 63 | 85 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 13.318 | 63 | 90 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 65 | 85 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.2E-7 | 65 | 90 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.681 | 91 | 120 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.063 | 91 | 115 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 5.8E-10 | 91 | 117 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 93 | 115 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.19E-5 | 101 | 145 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.4E-5 | 118 | 146 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0031 | 120 | 145 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.286 | 120 | 150 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 122 | 145 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.8E-7 | 156 | 183 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 6.07E-5 | 157 | 183 | No hit | No description |
PROSITE profile | PS50157 | 11.427 | 159 | 188 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.001 | 159 | 183 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 161 | 183 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 6 | 191 | 216 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 193 | 216 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 21 | 219 | 240 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 6.05E-9 | 230 | 287 | No hit | No description |
SMART | SM00355 | 0.006 | 249 | 274 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 13.214 | 249 | 279 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 251 | 274 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.6E-5 | 254 | 278 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Gene3D | G3DSA:3.30.160.60 | 4.8E-5 | 279 | 302 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 9.6 | 280 | 306 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 282 | 306 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008097 | Molecular Function | 5S rRNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0080084 | Molecular Function | 5S rDNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 373 aa Download sequence Send to blast |
MGEVGEEKRE VVFRDIRRYY CEFCGLCRSK KSLISSHIQS HHQDVIESLK DDATENAKGS 60 KMNICEECGA TFQKPAHLKQ HLQSHSLERP FVCHIDDCQS SYRRKDHLSR HLLLHQGKLF 120 ECPVDGCKST FSFQGNMTRH VKEMHDQPAS AEVDLPKEYV CSEAGCGKVF KYASKLRKHE 180 DSHVKLETVE AMCLEPGCMK HFTNEKCLKE HIESCHQHID CEICGTKQLK KNIKRHLRTH 240 EEGPISERIK CEFQDCLHTF SSRSNLAQHI KAVHVGSKPF SCSISGCGMK FAFKHVRDKH 300 EQSGCHVYTP GDFEEVDEQF LSRPRGGRKR EPTLFESIMR KRITPPSGID PVFNQTPEYL 360 SWLRSMESDN QM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tf6_A | 4e-17 | 67 | 211 | 19 | 155 | PROTEIN (TRANSCRIPTION FACTOR IIIA) |
1tf6_D | 4e-17 | 67 | 211 | 19 | 155 | PROTEIN (TRANSCRIPTION FACTOR IIIA) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00229 | DAP | Transfer from AT1G72050 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ882179 | 0.0 | DQ882179.1 Lycopersicon esculentum transcription factor IIIA mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001234471.1 | 0.0 | transcription factor IIIA | ||||
Swissprot | Q84MZ4 | 1e-139 | TF3A_ARATH; Transcription factor IIIA | ||||
TrEMBL | Q06HM7 | 0.0 | Q06HM7_SOLLC; Transcription factor IIIA | ||||
STRING | Solyc10g077110.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3644 | 24 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72050.2 | 1e-131 | transcription factor IIIA |