PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim10g076380.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 324aa    MW: 36429.3 Da    PI: 3.8478
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim10g076380.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2643.2e-201270155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpse...ng..krkrfslgkfgtaeeAakaaiaarkkleg 55
                        ++y+GVr++  +g+WvAeIr+p     ++  k kr +lg+f++a+eAa a+++a+k ++g
  Sopim10g076380.0.1 12 CKYRGVRQRT-WGKWVAEIREPAYisgDNksKGKRLWLGSFDSADEAAIAYDEAAKVMYG 70
                        79*****999.**********655665335556***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.65E-311279No hitNo description
PfamPF008473.6E-141270IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-281379IPR001471AP2/ERF domain
PROSITE profilePS5103222.6551378IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-201378IPR016177DNA-binding domain
SMARTSM003801.3E-351384IPR001471AP2/ERF domain
PRINTSPR003671.9E-91425IPR001471AP2/ERF domain
PRINTSPR003671.9E-94460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MQGKGGPENS SCKYRGVRQR TWGKWVAEIR EPAYISGDNK SKGKRLWLGS FDSADEAAIA  60
YDEAAKVMYG SNATLNFPNY SSNGSITRTS SLELSGQSCV DHEDLVLDGS KNDEIESDLK  120
TSDTPNTDLS YDYVNHGSPA CSWNEEDLEV IMEENSKNEL IDSEFETPLT KEDEFVQCLN  180
FNDVSNTKNV NEDVGARLEY MEHCVMDDNC SMEATNVLDT FCLTENHDEA FDFQRFLEES  240
FDFKLNYAEQ FDCTYAYNQQ IDLQNSETDS EIRSDGIWKE QNLGGFGLDN FGASNSTQPE  300
DNIEDLSMFS SDFDVSSFLN DII*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-191478360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-191484669ATERF1
3gcc_A3e-191484669ATERF1
5wx9_A1e-18285379Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755220.0HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027767967.10.0LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERN3-like
TrEMBLM1BAV21e-140M1BAV2_SOLTU; Uncharacterized protein
STRINGSolyc10g076380.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA79651530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38340.14e-27ERF family protein