PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim10g076370.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 406aa    MW: 46682.9 Da    PI: 4.3739
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim10g076370.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.4e-1867125155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr..krfslgkfgtaeeAakaaiaarkkleg 55 
                         ++y+GVr++  +g+WvAeIr+ +++ g  k+  kr +lg++ ta +Aa a+++a+k ++g
  Sopim10g076370.0.1  67 CKYRGVRQRT-WGKWVAEIREpVYISGqyKSkgKRLWLGTYSTAGDAAVAYDEAAKVMYG 125
                         79*****999.**********666677794456***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.03E-2967135No hitNo description
PfamPF008475.0E-1167125IPR001471AP2/ERF domain
PROSITE profilePS5103222.35268133IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-1968134IPR016177DNA-binding domain
SMARTSM003806.9E-3568139IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-2868135IPR001471AP2/ERF domain
PRINTSPR003677.8E-96980IPR001471AP2/ERF domain
PRINTSPR003677.8E-999115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MDFYDNRKVK RRRNGSDSIE EILLRWKNFN QEVNWNHEQV KKKRKSPGNG SNKGCMPGKG  60
GPENSGCKYR GVRQRTWGKW VAEIREPVYI SGQYKSKGKR LWLGTYSTAG DAAVAYDEAA  120
KVMYGSNAIL NFPNSSNGNI TRTSSGQSSI DHEESVVDDE KKTEIESDLK DDDGGVVVNM  180
DLSYDYANHG SPACSWTEEE LEVITEENSE IELTNLECDS RFFHKSHVKV ERPIMEEEID  240
EDEFVHNDVS NTIDVEPTVM FSKDDFSRLD ETRNSNDQIV LQDMDFRSSE NLNEDVSTRL  300
EYMEHFLMDD NCSMEAANIS DIICLTENHD EAFDFQRFLE ESFDFELNYA KNEEQFDCTY  360
AYNQQIDHQN SETNFEIRSD GIRKEKNLHG FGLDDFGASN NQRKI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-1969133360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1512NRKVKRRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755220.0HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010327719.10.0dehydration-responsive element-binding protein 2A
TrEMBLA0A3Q7IJR00.0A0A3Q7IJR0_SOLLC; Uncharacterized protein
STRINGSolyc10g076370.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA79651530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.11e-32ERF family protein