PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim10g050950.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 162aa    MW: 18602.2 Da    PI: 6.8041
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim10g050950.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF25.12.3e-081563149
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                        k+ien+     +fskRrng++K  + L    d+++ +i+fs+t k + +
  Sopim10g050950.0.1 15 KKIENEKALLSSFSKRRNGLFKATNNLIKEFDVDIGIIVFSPTSKPHSF 63
                        6899999999********************************9987766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-12766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.269767IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-17878IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-8929IPR002100Transcription factor, MADS-box
PfamPF003192.8E-151663IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-82944IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-84465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MENKKIKGRQ KIPMKKIENE KALLSSFSKR RNGLFKATNN LIKEFDVDIG IIVFSPTSKP  60
HSFFHPTTDA VISRFQNPDM QLSDETHLAT VFARNSVNQL EKKLEELDIK EKIGSDRTNY  120
LDQMTETRQK GWWESIEQLN EDEVSKLEAW LDVASLLCTT V*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755220.0HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004248898.11e-116agamous-like MADS-box protein AGL62
TrEMBLA0A3Q7JBP71e-100A0A3Q7JBP7_SOLLC; Uncharacterized protein
STRINGSolyc10g050950.1.11e-116(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.17e-20AGAMOUS-like 57