PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim10g008880.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

VOZ

Protein Properties

Length: 478aa MW: 53537.7 Da PI: 6.3614

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim10g008880.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	413.9	2.9e-127	199	418	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewl...qdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaataks 88 pppsaflgpkcalwdc+rpa gs+w+ qdycs +ha+la neg pg pv+rp gi+lkd+llf+al ak++gkevg+pecegaataks Sopim10g008880.0.1 199 PPPSAFLGPKCALWDCPRPAMGSDWCqksQDYCSDYHASLAPNEGYPGRPPVVRPMGIGLKDNLLFQALGAKAHGKEVGVPECEGAATAKS 289 89*********************944459******************************************************** PP VOZ 89 pwnaaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeinelda 179 pwna+elfdl+++ege irewlffdkprrafesgnrkqrslpdy+grgwhesrkq+m+efgglkrsyymdpqp++++ewhlyeyein++da Sopim10g008880.0.1 290 PWNAPELFDLKVVEGEVIREWLFFDKPRRAFESGNRKQRSLPDYNGRGWHESRKQMMNEFGGLKRSYYMDPQPMKNLEWHLYEYEINKYDA 380 *************************************************************************************** PP VOZ 180 lalyrlelklvdekksakgkvskdsladlqkklgrlta 217 +alyrlelklvd+kk +kgk+s+ s+adlqk++grlta Sopim10g008880.0.1 381 CALYRLELKLVDGKKIPKGKISNVSVADLQKQMGRLTA 418 **********************************97 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009408	Biological Process	response to heat
GO:0009414	Biological Process	response to water deprivation
GO:0009631	Biological Process	cold acclimation
GO:0009816	Biological Process	defense response to bacterium, incompatible interaction
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048578	Biological Process	positive regulation of long-day photoperiodism, flowering
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence Send to blast
MRKVSKRGAC KSASHQLFKD RAKNRVDDLQ GVLTNLQSAR KESRTYDVGL LEEQVHQMLR 60 EWKSELNEPS PASSLQGGSR VSSSADIYRL LLGEEEDDAT SALAAPKPEP DAQKVSITGF 120 QEGFNVTQVL QEQGFQLVDQ CKGLPLMVNN TGVNNLGIAT QLDYHSFDLH REYDQQYLPG 180 FDALNLCLED AMPPIHISPP PSAFLGPKCA LWDCPRPAMG SDWCQKSQDY CSDYHASLAP 240 NEGYPGRPPV VRPMGIGLKD NLLFQALGAK AHGKEVGVPE CEGAATAKSP WNAPELFDLK 300 VVEGEVIREW LFFDKPRRAF ESGNRKQRSL PDYNGRGWHE SRKQMMNEFG GLKRSYYMDP 360 QPMKNLEWHL YEYEINKYDA CALYRLELKL VDGKKIPKGK ISNVSVADLQ KQMGRLTAEF 420 PLDNKRTVKG RVKANMKNMG NIHAAPVPIV PIGEGFDYGN TDPYDYLLDD LDGYFIT*

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence Send to blast

MRKVSKRGAC KSASHQLFKD RAKNRVDDLQ GVLTNLQSAR KESRTYDVGL LEEQVHQMLR  60
EWKSELNEPS PASSLQGGSR VSSSADIYRL LLGEEEDDAT SALAAPKPEP DAQKVSITGF  120
QEGFNVTQVL QEQGFQLVDQ CKGLPLMVNN TGVNNLGIAT QLDYHSFDLH REYDQQYLPG  180
FDALNLCLED AMPPIHISPP PSAFLGPKCA LWDCPRPAMG SDWCQKSQDY CSDYHASLAP  240
NEGYPGRPPV VRPMGIGLKD NLLFQALGAK AHGKEVGVPE CEGAATAKSP WNAPELFDLK  300
VVEGEVIREW LFFDKPRRAF ESGNRKQRSL PDYNGRGWHE SRKQMMNEFG GLKRSYYMDP  360
QPMKNLEWHL YEYEINKYDA CALYRLELKL VDGKKIPKGK ISNVSVADLQ KQMGRLTAEF  420
PLDNKRTVKG RVKANMKNMG NIHAAPVPIV PIGEGFDYGN TDPYDYLLDD LDGYFIT*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT014516	0.0	BT014516.1 Lycopersicon esculentum clone 133906R, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004248126.1	0.0	transcription factor VOZ1
Refseq	XP_004248127.1	0.0	transcription factor VOZ1
Swissprot	Q9SGQ0	0.0	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A3Q7J701	0.0	A0A3Q7J701_SOLLC; Uncharacterized protein
STRING	Solyc10g008880.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2818	24	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	0.0	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]