PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim09g083360.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 234aa    MW: 27132.9 Da    PI: 9.1353
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim09g083360.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.12.4e-0682128455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h + Er RR++ ++++ +L +llP       +K++K +i++ A++ I +Lq
  Sopim09g083360.0.1  82 KHMIKERIRREKQKQSYLNLYKLLPMG-----TKNEKNAIVQTATRRIEELQ 128
                         68899********************97.....8*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.02E-1069141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.03E-576129No hitNo description
PROSITE profilePS5088810.36678127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-582142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MEEFFQVSWF CDDENETNNN FVVNQSAFVS FGSKSNEGFG VSSYGNVSMN HRNMNKRMIE  60
FLKKNWSPKN GQVKIEKEKV HKHMIKERIR REKQKQSYLN LYKLLPMGTK NEKNAIVQTA  120
TRRIEELQKY KENLEKRNDE IQLILAQSDK KEEEFEKAKI KAKVGNPICG VDSMLEVLKC  180
LRNCETKANS IQSSFSHQEF STLIEIETKS GAAEIEKAVQ NTLFEVERNL RAH*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755210.0HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004247648.11e-171transcription factor bHLH92 isoform X1
TrEMBLA0A3Q7I6U61e-170A0A3Q7I6U6_SOLLC; Uncharacterized protein
STRINGSolyc09g083360.2.11e-170(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA124631821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.17e-40bHLH family protein