PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim08g081140.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 627aa MW: 70053.8 Da PI: 5.4516 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.5 | 5e-13 | 439 | 482 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + ErrRR++iN++f L ++lP++ K++K++ L +++eY+k+L+ Sopim08g081140.0.1 439 ISERRRREKINERFMHLASMLPTS-----SKVDKISLLDETIEYMKELE 482 68*********************8.....7****************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 3.3E-53 | 15 | 202 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.139 | 432 | 481 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.38E-13 | 435 | 486 | No hit | No description |
SuperFamily | SSF47459 | 3.4E-16 | 435 | 496 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.6E-16 | 437 | 494 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.2E-16 | 438 | 487 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-10 | 439 | 482 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009957 | Biological Process | epidermal cell fate specification | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 627 aa Download sequence Send to blast |
MAMGHQDQDG VPGNLRKQLA LAVRGIQWSY AIFWSTAVTQ PGVLKWIDGY YNGDIKTRKT 60 VQAGEVNEDQ LGLHRTEQLK ELYSSLLTSE SEEDLQPQAK RPSASLSPED LTDTEWYFLV 120 CMSFVFNVGQ GLPGKTLATN ETVWLCNAHQ AESKVFSRSL LAKSASIQTV VCFPYLGGVI 180 ELGVTELVTE DPNLIQQIKN SFLEVDYSVI LKRPNYVSND AKNDTNIGSQ KPDHNALEND 240 AYPVEINSPH DSSNGFVANQ EAEDSLMVVD GIGETSQAQS WRFMDDNISN GANNSLNSSD 300 CISQNNANCE KLSPLSSGEK ETKPCPLDRQ ENDQKKPHLL DHQGDDAQYQ AVLSTLLKSS 360 DQLTLGPHFR NMNKKSSFAS WKTDIQMPRF GTAQKLLKKV LLEVPRMHAG VIHKFSRENG 420 KKNSLWRPEV DDIDRNRVIS ERRRREKINE RFMHLASMLP TSSKVDKISL LDETIEYMKE 480 LERRVQELEA RSARRSNDTA EQTSDNCGTS KFNDIRGSLP NKRKACDMDE IEPESSNGLL 540 KCSSADSIVI NMIDKEVSIK MSCLWSESLL LKIMEALTDL HMDCHTVQSS NLDGILSIAI 600 ESKSTGSKTL AVGTIREALQ RVVWKS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 5e-18 | 16 | 202 | 12 | 192 | Transcription factor MYC3 |
4rqw_B | 5e-18 | 16 | 202 | 12 | 192 | Transcription factor MYC3 |
4rs9_A | 5e-18 | 16 | 202 | 12 | 192 | Transcription factor MYC3 |
4yz6_A | 5e-18 | 16 | 202 | 12 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 440 | 445 | ERRRRE |
2 | 441 | 446 | RRRREK |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG763862 | 0.0 | HG763862.1 Solanum tuberosum mRNA for JAF13 transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001333930.1 | 0.0 | bHLH-type transcription factor JAF13 | ||||
TrEMBL | U6NE39 | 0.0 | U6NE39_SOLTU; JAF13 transcription factor | ||||
STRING | Solyc08g081140.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4576 | 24 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41315.1 | 1e-171 | bHLH family protein |