PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim08g074860.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bZIP | ||||||||
Protein Properties | Length: 411aa MW: 45702.8 Da PI: 6.0285 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 21.4 | 5.4e-07 | 165 | 226 | 1 | 62 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 ek+ k+ ++++ R+ ++ +R R+k ++e+Le+ v ++++ ++L +++l+ e a+lk++ Sopim08g074860.0.1 165 EKDEKKKSKLERDRVNSQTYRNRRKHYVEKLEDNVRTMQSTIQELNRMISHLTLENATLKTQ 226 7899*******************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.7E-9 | 162 | 227 | No hit | No description |
SMART | SM00338 | 7.3E-5 | 165 | 229 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.852 | 167 | 230 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.05E-6 | 169 | 227 | No hit | No description |
CDD | cd14704 | 7.70E-9 | 176 | 221 | No hit | No description |
SuperFamily | SSF54928 | 2.96E-27 | 316 | 406 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
Gene3D | G3DSA:3.30.70.330 | 5.7E-25 | 323 | 405 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
PROSITE profile | PS50102 | 18.086 | 327 | 405 | IPR000504 | RNA recognition motif domain |
CDD | cd12408 | 9.17E-40 | 328 | 403 | No hit | No description |
SMART | SM00360 | 2.0E-24 | 328 | 401 | IPR000504 | RNA recognition motif domain |
Pfam | PF00076 | 5.8E-19 | 329 | 395 | IPR000504 | RNA recognition motif domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 411 aa Download sequence Send to blast |
MENSDKPLEN DSSGVPVPPP DNGINNDSNV ESAAQKDEVM LDDVETEIDL SIDDVFPPPD 60 VEYLNESPES SNRKASMESG NGYSINLNYP SLEYQHSGNC GMNNLVNSSP NVVNNSVKCG 120 VVDEQQIRLK DLKRKKVSDD SNNAFKHEKS EFVVDGSNIR NVSSEKDEKK KSKLERDRVN 180 SQTYRNRRKH YVEKLEDNVR TMQSTIQELN RMISHLTLEN ATLKTQMGST SQIPPPHGMN 240 PYHTIRSPWM FDGPPYMARP QGSQVPHIVI KPIPRKPQAV APPTSREAPA AGAGSQKSAY 300 FPPIMTGGAS TSRSGEGTEM RRRNDENSVR ITNISENTRE ADLLELFCPF GHVNGVYVAI 360 DQNTGMSRGF GFVNFVNRED AERAINKLNG HSYHNLILRV EWAAPSVCFP * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cq0_A | 7e-25 | 314 | 406 | 3 | 95 | Eukaryotic translation initiation factor 3 subunit 4 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975520 | 0.0 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010325641.1 | 0.0 | bZIP transcription factor 17-like | ||||
TrEMBL | A0A3Q7HQR8 | 0.0 | A0A3Q7HQR8_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g074860.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA18614 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56660.1 | 6e-19 | basic region/leucine zipper motif protein 49 |