PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AT3G56660.1

Common Name

BZIP49, T5P19.310

Organism

Arabidopsis thaliana

Taxonomic ID

3702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bZIP

Protein Properties

Length: 620aa MW: 68184.2 Da PI: 5.8997

Description

basic region/leucine zipper motif protein 49

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT3G56660.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	38.1	3.4e-12	172	219	3	50
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 e k+ r+ +NRe+A sRqRKk ++eeLe+kvk++ + ++L ++++ AT3G56660.1 172 EKKKNVRLVRNRESAHLSRQRKKHYVEELEDKVKNMHSTISELSSKMS 219 6799********************************999999998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.0E-11	168	234	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.45	172	235	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	6.1E-10	172	231	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.44E-12	174	232	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.3E-14	174	232	No hit	No description
CDD	cd14704	1.83E-19	178	225	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005789	Cellular Component	endoplasmic reticulum membrane
GO:0016021	Cellular Component	integral component of membrane
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 620 aa Download sequence Send to blast
MAEPVLEDTY LTFSSDFDYI AIAPSPFDNF CNSNSDQVRN SISDLRFLID DDDSFDDLYF 60 PSENESFCIP PDATKREMSG DFTPASGISG DCVNEDTEKN TNGVLISTSS CYNRESPTDS 120 DFSGTSQSLS FSGQDSAKRK TEIEEDSSDE SRRLGKDGFA SVIKVGGEED DEKKKNVRLV 180 RNRESAHLSR QRKKHYVEEL EDKVKNMHST ISELSSKMSY FVAENVTLRQ QMGTRFSSGP 240 PMVPIVYPWM QYPAYMVKPQ GSQVALLPIP RLKPKHSVAK VKKFKKVASF SVFGFLFCMF 300 LFGALVNISY GEYKSNYVTD GVYDQSRGRV LVVDSSRVHC GGDSDQGVGR NVSETENLGP 360 PRNSSEPLVA SLFVPRNEKL VKIDGNLIIH SVLASEKARD SETKNEEGKS VLATTTKTLS 420 PALPLPDSTS PRTRDVSKHL YSETGKGLSS SGSDDASNDQ LKSTIANGKM QQWFREGVAG 480 PMFSSGMCTE VFQFDVSSNS GAIIPASPHT QQCKNTSDTQ KGKKNRRILS GGLPVSDFNL 540 TKEDHNSSSK DKFRETKPGP SMVVSVLVDP REGGNGDIDG MMGGTKPQSR VFIVVLVDGV 600 KYITYSCVLP RPDVPHLMTS

Sequence ? help Back to Top

Protein Sequence Length: 620 aa Download sequence Send to blast

MAEPVLEDTY LTFSSDFDYI AIAPSPFDNF CNSNSDQVRN SISDLRFLID DDDSFDDLYF  60
PSENESFCIP PDATKREMSG DFTPASGISG DCVNEDTEKN TNGVLISTSS CYNRESPTDS  120
DFSGTSQSLS FSGQDSAKRK TEIEEDSSDE SRRLGKDGFA SVIKVGGEED DEKKKNVRLV  180
RNRESAHLSR QRKKHYVEEL EDKVKNMHST ISELSSKMSY FVAENVTLRQ QMGTRFSSGP  240
PMVPIVYPWM QYPAYMVKPQ GSQVALLPIP RLKPKHSVAK VKKFKKVASF SVFGFLFCMF  300
LFGALVNISY GEYKSNYVTD GVYDQSRGRV LVVDSSRVHC GGDSDQGVGR NVSETENLGP  360
PRNSSEPLVA SLFVPRNEKL VKIDGNLIIH SVLASEKARD SETKNEEGKS VLATTTKTLS  420
PALPLPDSTS PRTRDVSKHL YSETGKGLSS SGSDDASNDQ LKSTIANGKM QQWFREGVAG  480
PMFSSGMCTE VFQFDVSSNS GAIIPASPHT QQCKNTSDTQ KGKKNRRILS GGLPVSDFNL  540
TKEDHNSSSK DKFRETKPGP SMVVSVLVDP REGGNGDIDG MMGGTKPQSR VFIVVLVDGV  600
KYITYSCVLP RPDVPHLMTS

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	18410548	0.0
Genevisible	251702_at	0.0
Expression Atlas	AT3G56660	-
AtGenExpress	AT3G56660	-
ATTED-II	AT3G56660	-

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in stress responses. {ECO:0000250\|UniProtKB:O22208}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT3G56660.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Interaction ? help Back to Top
Source	Intact With
BioGRID	AT3G56660

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT3G56660

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL163972	0.0	AL163972.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T5P19.
GenBank	AL390921	0.0	AL390921.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T8M16.
GenBank	CP002686	0.0	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_191225.1	0.0	basic region/leucine zipper motif protein 49
Swissprot	Q9LXX4	0.0	BZP49_ARATH; bZIP transcription factor 49
TrEMBL	A0A178VAE1	0.0	A0A178VAE1_ARATH; BZIP49
STRING	AT3G56660.1	0.0	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16991	9	11
Representative plant	OGRP2171	16	28

Link Out ? help Back to Top
Phytozome	AT3G56660.1
Entrez Gene	824833
iHOP	AT3G56660
wikigenes	AT3G56660

Publications ? help Back to Top
Riechmann JL, et al. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] Jakoby M, et al. bZIP transcription factors in Arabidopsis. Trends Plant Sci., 2002. 7(3): p. 106-11 [PMID:11906833] Satoh R,Fujita Y,Nakashima K,Shinozaki K,Yamaguchi-Shinozaki K A novel subgroup of bZIP proteins functions as transcriptional activators in hypoosmolarity-responsive expression of the ProDH gene in Arabidopsis. Plant Cell Physiol., 2004. 45(3): p. 309-17 [PMID:15047879] Deppmann CD, et al. Dimerization specificity of all 67 B-ZIP motifs in Arabidopsis thaliana: a comparison to Homo sapiens B-ZIP motifs. Nucleic Acids Res., 2004. 32(11): p. 3435-45 [PMID:15226410] Deppmann CD,Alvania RS,Taparowsky EJ Cross-species annotation of basic leucine zipper factor interactions: Insight into the evolution of closed interaction networks. Mol. Biol. Evol., 2006. 23(8): p. 1480-92 [PMID:16731568] Liu JX,Srivastava R,Che P,Howell SH Salt stress responses in Arabidopsis utilize a signal transduction pathway related to endoplasmic reticulum stress signaling. Plant J., 2007. 51(5): p. 897-909 [PMID:17662035] Liu JX,Srivastava R,Che P,Howell SH An endoplasmic reticulum stress response in Arabidopsis is mediated by proteolytic processing and nuclear relocation of a membrane-associated transcription factor, bZIP28. Plant Cell, 2007. 19(12): p. 4111-9 [PMID:18156219] Tajima H,Iwata Y,Iwano M,Takayama S,Koizumi N Identification of an Arabidopsis transmembrane bZIP transcription factor involved in the endoplasmic reticulum stress response. Biochem. Biophys. Res. Commun., 2008. 374(2): p. 242-7 [PMID:18634751] Liu JX,Howell SH bZIP28 and NF-Y transcription factors are activated by ER stress and assemble into a transcriptional complex to regulate stress response genes in Arabidopsis. Plant Cell, 2010. 22(3): p. 782-96 [PMID:20207753] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]