PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim08g066510.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | GATA | ||||||||
Protein Properties | Length: 360aa MW: 40265 Da PI: 6.7917 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 56.1 | 5.2e-18 | 252 | 286 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C t kTp+WR gp g+ktLCnaCG++y++ +l Sopim08g066510.0.1 252 CLHCATDKTPQWRTGPLGPKTLCNACGVRYKSGRL 286 99*****************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 3.4E-78 | 12 | 341 | IPR016679 | Transcription factor, GATA, plant |
PROSITE profile | PS50114 | 12.677 | 246 | 282 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.9E-14 | 246 | 283 | IPR013088 | Zinc finger, NHR/GATA-type |
SMART | SM00401 | 1.3E-16 | 246 | 296 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.66E-15 | 247 | 310 | No hit | No description |
CDD | cd00202 | 1.91E-14 | 251 | 298 | No hit | No description |
Pfam | PF00320 | 7.4E-16 | 252 | 286 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 252 | 277 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
METPDFFQTG YYNSSEKQLI SDVKNGEHFV VDDLLDLPND EGMATDDTLD LTVIGNSTDC 60 SVVHNSCNSS LSGSNHHPQS LGYRDFPQGH LSTEFALPYE DMAELEWLSN FVEESFSSNE 120 MHKMQMVQAM RNRTDSEIHQ FIPDPNRASA TSNTIFKPEM PVPAKARSKR SRMAPGNWAS 180 RLLVVSPNTT NPDSSMDTIS VQDMSSSSES GMIIPSSGKK TVKCSSAPKK KENNIHHVPS 240 NNTGSNSEGR KCLHCATDKT PQWRTGPLGP KTLCNACGVR YKSGRLVPEY RPAASPTFML 300 TKHSNSHRKV LEIRRQKEVT QVEHQHQHQF LPHNMMFDVS NADDYLIHQH MGPDFRQLI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00530 | DAP | Transfer from AT5G25830 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975520 | 0.0 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004245156.2 | 0.0 | GATA transcription factor 12 | ||||
Swissprot | P69781 | 2e-80 | GAT12_ARATH; GATA transcription factor 12 | ||||
TrEMBL | A0A3Q7HNI5 | 0.0 | A0A3Q7HNI5_SOLLC; GATA transcription factor | ||||
STRING | Solyc08g066510.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1919 | 23 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25830.1 | 5e-74 | GATA transcription factor 12 |
Publications ? help Back to Top | |||
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