PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim08g005290.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bZIP
Protein Properties Length: 398aa    MW: 42068 Da    PI: 7.1811
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim08g005290.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_165.31.1e-20301363163
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         e+elkr++rkq+NRe+ArrsR+RK+ae++eL++++++L++eN +L+ e+++++ e++ l +++
  Sopim08g005290.0.1 301 ERELKRQKRKQSNRESARRSRLRKQAECDELAQRAEVLKEENASLRAEVNRIRSEYEHLLAQN 363
                         89********************************************************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077775.4E-31197IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165963.2E-51137269No hitNo description
Gene3DG3DSA:1.20.5.1701.6E-18294362No hitNo description
PfamPF001705.0E-19301363IPR004827Basic-leucine zipper domain
SMARTSM003382.1E-22301365IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.036303366IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.5E-11304360No hitNo description
CDDcd147021.73E-23306356No hitNo description
PROSITE patternPS000360308323IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MGSSEMDKSS KEAKEAKESK PPNSQEQTST TTAGPVNQDW SGFQAYSPMP PHGFMASSPQ  60
AHPYMWGVQQ FMPPYGTPPH PYVAMYPHGG IYAHPSIAPG SYPFSPFAMP SPNGVAEASV  120
NNSGNVEVDG KSSEGKEKLP IKRSRGSLGS LNMITGKNNG AGKTSGASAN GVYSKSAESG  180
SEGSSEGSDA HSQNESPMNS GGRQDSADTS QNGNAAHGSQ NGGTGTPHSM INQTMAIVSA  240
AGAGGIPGPT TNLNIGMDYW GAATSSSIPA MHGKVPVSVA GGLVTAGSRD SVQSQMWIQD  300
ERELKRQKRK QSNRESARRS RLRKQAECDE LAQRAEVLKE ENASLRAEVN RIRSEYEHLL  360
AQNASLKERL GEDDPRTGRE DHLPGKNAQH SSQTESQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1317323RRSRLRK
2317324RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00291DAPTransfer from AT2G35530Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004244410.10.0bZIP transcription factor 16
SwissprotQ501B21e-166BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A3Q7HJ430.0A0A3Q7HJ43_SOLLC; Uncharacterized protein
STRINGSolyc08g005290.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30652446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-154basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]