PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim07g018290.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family AP2
Protein Properties Length: 469aa    MW: 52373.7 Da    PI: 8.2673
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim07g018290.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.65.6e-12120176155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  + ++ ++ k  + g ++ +e+Aa+a++ a++k++g
  Sopim07g018290.0.1 120 SIYRGVTRHRWTGRYEAHLWDnSCRRQgQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 176
                         57*******************55554455536655.779999**************98 PP
2AP247.44.7e-15219270155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Sopim07g018290.0.1 219 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 270
                         57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.65E-20120186No hitNo description
PfamPF008471.7E-9120176IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-15120186IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-12121185IPR001471AP2/ERF domain
PROSITE profilePS5103217.477121184IPR001471AP2/ERF domain
SMARTSM003801.6E-22121190IPR001471AP2/ERF domain
PRINTSPR003672.2E-6122133IPR001471AP2/ERF domain
PfamPF008475.8E-10219270IPR001471AP2/ERF domain
CDDcd000183.32E-26219280No hitNo description
SuperFamilySSF541716.41E-18219280IPR016177DNA-binding domain
PROSITE profilePS5103219.045220278IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-18220278IPR001471AP2/ERF domain
SMARTSM003807.9E-34220284IPR001471AP2/ERF domain
PRINTSPR003672.2E-6260280IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MDMNSSSCEK WLGFSLSNIN NLSPSTTNSS QLSLFQAFNS NPNTNCEVVR QNENGEPKVE  60
NMLGSCCDSN TPTSCEYGSE LKRIAATFLP TTFSDDHKEK LPLIVTQPKK PHESFGQRTS  120
IYRGVTRHRW TGRYEAHLWD NSCRRQGQSR KGRQGGYDKE EKAARAYDLA ALKYWGPTTT  180
TNFPVSNYER ELEEMKNMTR QEFVASLRRK SSGFSRGASI YRGVTRHHQH GRWQARIGRV  240
AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG LNAVTNFDIS RYDVKSIASS NLPVGGMSNK  300
SKSSSDETTK HVENRPNLRD QDQDRDISSA PNYTSKNLAM VNLGFGLPIK QDAFDFWSSV  360
GYNNNRSKNG LLFQGTTMNA QGTTFFSNEV NNSSVMLNEQ GYDNHDQQQQ SGGSSCEINM  420
ALNSNIATTS TTIDSTNFGN WMTPSLHSFQ SSTKNDLGPY HTPIFGME*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755190.0HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010323408.10.0AP2-like ethylene-responsive transcription factor AIL5 isoform X1
SwissprotQ6PQQ31e-139AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A3Q7H9410.0A0A3Q7H941_SOLLC; Uncharacterized protein
STRINGSolyc07g018290.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22462457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-124AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]