PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim06g076000.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | WOX | ||||||||
Protein Properties | Length: 241aa MW: 26821 Da PI: 8.2074 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.6 | 5.8e-20 | 19 | 77 | 4 | 57 |
-SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 R+++tkeq++ Le+l+++ r+psa+++++++ +l +++ ++V++WFqN++a++++ Sopim06g076000.0.1 19 RWNPTKEQIDLLESLYKQgIRTPSADQIQQITGRLrafgHIEGKNVFYWFQNHKARQRQ 77 9****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 113.7 | 9.4e-37 | 18 | 79 | 4 | 65 |
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 RW+Pt+eQi +Le+lyk+G+rtP++++iq+it +L+++G+ie+kNVfyWFQN+kaR+rqkq Sopim06g076000.0.1 18 CRWNPTKEQIDLLESLYKQGIRTPSADQIQQITGRLRAFGHIEGKNVFYWFQNHKARQRQKQ 79 6***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 2.9E-4 | 15 | 82 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.98E-12 | 16 | 82 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.1E-8 | 18 | 77 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.5E-17 | 19 | 77 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.15E-6 | 19 | 79 | No hit | No description |
PROSITE profile | PS50071 | 10.365 | 23 | 78 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0010654 | Biological Process | apical cell fate commitment | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0090451 | Biological Process | cotyledon boundary formation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MSDSSVDMIT SGGSPVGCRW NPTKEQIDLL ESLYKQGIRT PSADQIQQIT GRLRAFGHIE 60 GKNVFYWFQN HKARQRQKQK QDKFAYYNRF LHRTSVFPPP NCPNGFVVVC SPYYTAQNNL 120 GFYQQYPAVP SMIIPGPGGF KRRATCNQET LNLCEQNNSP NANKEFITQE TLNLFPLHPT 180 GVLQEKTTIA DSSSSSSTCV PHDHLSSNTT SNSVEVNCFT DLGIGASDRP QPVFNFLCGN 240 * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in embryonic patterning. Required for apical embryo development after fertilization. Its specific localization to the apical daughter cell of the zygote, while WOX8 is confined to the basal cell, suggests that the asymmetric division of the plant zygote separates determinants of apical and basal cell fates. {ECO:0000269|PubMed:14711878}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975518 | 0.0 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004242075.3 | 1e-171 | WUSCHEL-related homeobox 2 | ||||
Swissprot | Q6X7K1 | 9e-52 | WOX2_ARATH; WUSCHEL-related homeobox 2 | ||||
TrEMBL | K4C9W1 | 1e-179 | K4C9W1_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g076000.1.1 | 1e-180 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11414 | 19 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59340.1 | 2e-43 | WUSCHEL related homeobox 2 |
Publications ? help Back to Top | |||
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