PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim06g075140.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GATA
Protein Properties Length: 259aa    MW: 28673.5 Da    PI: 8.1167
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim06g075140.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.31.2e-19169203135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++C +tkTp+WR+gp g+ktLCnaCG++yr+ +l
  Sopim06g075140.0.1 169 CTHCEVTKTPQWREGPLGPKTLCNACGVRYRSGRL 203
                         *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577164.75E-15163225No hitNo description
SMARTSM004011.4E-15163213IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.358167199IPR000679Zinc finger, GATA-type
CDDcd002022.20E-16168217No hitNo description
Gene3DG3DSA:3.30.50.103.4E-14168200IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440169194IPR000679Zinc finger, GATA-type
PfamPF003201.6E-17169203IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MVEQNYMDGI SMGHIENEDF ESILNGLDFS IQNLEADRLD EDWDATVYGE LLGPIPSETL  60
MSLPPLELTN VDNVFPEAQG NVIFQTGSPI SVLENTRSCS GGRSAISFNF GSKGRRSKRA  120
RSSTLNPWLK MAPMPCTTSA AKKNSDSKIG KVNKRKLSSA MASPLFKRCT HCEVTKTPQW  180
REGPLGPKTL CNACGVRYRS GRLLPEYRPA ASPTFIPSLH SNSHKKVVEM RRKTVESSPE  240
FDSQNFVPLG SYLLDEYF*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00130DAPTransfer from AT1G08010Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004242094.20.0GATA transcription factor 11-like
TrEMBLA0A3Q7H0T50.0A0A3Q7H0T5_SOLLC; Uncharacterized protein
STRINGSolyc06g075140.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31342149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.28e-43GATA transcription factor 11