PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim06g072720.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C3H | ||||||||
Protein Properties | Length: 358aa MW: 39132.4 Da PI: 7.0145 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 29.6 | 1.2e-09 | 103 | 127 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ G C+y +C+FaHg Sopim06g072720.0.1 103 FKTKLCCKFRA-GVCPYVTNCNFAHG 127 69*********.*************8 PP | |||||||
2 | zf-CCCH | 18.7 | 3.2e-06 | 182 | 202 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C+ f+ C+yGd+C+F H+ Sopim06g072720.0.1 182 CKKFYTEEGCPYGDSCTFLHD 202 99999999************7 PP | |||||||
3 | zf-CCCH | 44.3 | 3e-14 | 236 | 261 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg Sopim06g072720.0.1 236 WKTRICNKWETTGYCPFGSKCHFAHG 261 8************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 2.5E-14 | 100 | 135 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.19E-8 | 100 | 133 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.709 | 102 | 129 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.012 | 102 | 128 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.7E-7 | 103 | 127 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.328 | 176 | 204 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.85 | 176 | 203 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.72E-7 | 177 | 204 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-8 | 178 | 204 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-17 | 231 | 266 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-10 | 232 | 266 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.422 | 235 | 263 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.6E-9 | 235 | 262 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.2E-11 | 236 | 261 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MDFTGEAGFA GGNVIPDSTA GVGGYDSWGP NFSDQAVWAT EDDYKAWNSG PYCETPSNSS 60 QDGRHSQNRS GSEPPNKKSR NVQDSDARII VTSSSKAIGK MFFKTKLCCK FRAGVCPYVT 120 NCNFAHGIEE LRKPPPNWQE IVAAHENERG VMVELREEHQ IPILSSPDLR GESQRSAKGR 180 HCKKFYTEEG CPYGDSCTFL HDEQSRSRES VAISVTPTVG GFGNNATGAT QKPSNWKTRI 240 CNKWETTGYC PFGSKCHFAH GVAELNKFGG GPAETDGKDY VSVPPELKQG GVPSRATEST 300 VPSTIPALHT DVYHLGQGVQ VQRPTGIADR PGQRFFQKWK GPDKISKIYG DWIDDIE* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT014073 | 0.0 | BT014073.1 Lycopersicon esculentum clone 133173F, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004241444.1 | 0.0 | zinc finger CCCH domain-containing protein 56 | ||||
Swissprot | Q84UQ3 | 1e-120 | C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56 | ||||
TrEMBL | A0A3Q7H1U2 | 0.0 | A0A3Q7H1U2_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g072720.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3729 | 23 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 1e-116 | C3H family protein |