PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim06g068580.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NAC | ||||||||
Protein Properties | Length: 351aa MW: 39950.5 Da PI: 4.5666 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 105.4 | 7e-33 | 12 | 140 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgk.rknratk..sgyWkatgkd 89 ppGfrF Ptdee++++yL + v+g+ + +i+ vd+y+++P Lp v+ + + +yfF+krd+ky +g+ +++r+t+ +gyWk+t k+ Sopim06g068580.0.1 12 PPGFRFIPTDEEILQYYLFRYVTGNYILP-GIIPLVDLYECDPDYLP-GVNMDGEYTYFFTKRDRKYVNGTkNTSRVTRdgRGYWKSTNKK 100 9*************************777.79***************.566788899***********9872566788867899******* PP NAM 90 kevlskkgelvglkktLvfykgrapkge..ktdWvmheyrl 128 v++++g++ g k+tL +y ++p+g ++W+mhey + Sopim06g068580.0.1 101 SIVVAQDGSKLGKKTTLKYY-FKNPEGDdiPAQWIMHEYVI 140 *****9**************.45555552379*******75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-37 | 9 | 165 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 38.411 | 11 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.6E-20 | 12 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MSGEEEWKQQ IPPGFRFIPT DEEILQYYLF RYVTGNYILP GIIPLVDLYE CDPDYLPGVN 60 MDGEYTYFFT KRDRKYVNGT KNTSRVTRDG RGYWKSTNKK SIVVAQDGSK LGKKTTLKYY 120 FKNPEGDDIP AQWIMHEYVI SCKIVKPSIE DEYYEDIAAC RIYKKKPEVK EETLTDPNLL 180 MSDHNNNGEP QLSVKRKFIA SDPPHDTTMS SNYLCDSQAA LILDGMRTTY EVGQTSNTKS 240 IPIEINHTSS TNLTPFEIDQ MSYTKSTLFE IGQTSNTNST PLQGNIVPMG KGVFVDPTDQ 300 TSTNVYQNQS NEGKIEGTNF DLDLDGLHNI LHDSSPPDES FEEYWQSLQI * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-26 | 11 | 171 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-26 | 11 | 171 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-26 | 11 | 171 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-26 | 11 | 171 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-26 | 11 | 171 | 17 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-26 | 11 | 171 | 17 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975518 | 0.0 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010322975.1 | 0.0 | NAC domain-containing protein 55-like | ||||
TrEMBL | K4C832 | 0.0 | K4C832_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g068580.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA16162 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17260.1 | 1e-31 | NAC domain containing protein 86 |