PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim06g054620.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C3H | ||||||||
Protein Properties | Length: 381aa MW: 40984.8 Da PI: 6.7685 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.7 | 7e-12 | 47 | 71 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +++r+G+C yG+rC+F+H++ Sopim06g054620.0.1 47 EPDCIYYLRNGICGYGSRCRFNHPR 71 799********************96 PP | |||||||
2 | zf-CCCH | 33.1 | 9.5e-11 | 96 | 117 | 6 | 27 |
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C++++rtG C++G++Ck++H++ Sopim06g054620.0.1 96 CQYYMRTGMCRFGASCKYHHPR 117 ********************96 PP | |||||||
3 | zf-CCCH | 30.9 | 4.8e-10 | 139 | 163 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C ++++tG+Ck+G CkF+H++ Sopim06g054620.0.1 139 EKECAHYMKTGHCKFGIICKFNHPQ 163 679********************97 PP | |||||||
4 | zf-CCCH | 34.9 | 2.6e-11 | 334 | 360 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++++G Ck+G++Ck+ H+p Sopim06g054620.0.1 334 PGQPECHYYMKYGDCKFGSSCKYQHPP 360 5789*********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 7.8E-6 | 44 | 71 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.418 | 44 | 72 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-9 | 47 | 71 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.27E-6 | 48 | 72 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.0E-5 | 50 | 71 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.1E-4 | 90 | 117 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.399 | 90 | 118 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-6 | 93 | 118 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.9E-5 | 95 | 117 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-7 | 96 | 117 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0048 | 136 | 163 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.554 | 136 | 164 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-5 | 137 | 164 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-7 | 139 | 163 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.9E-5 | 333 | 360 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.352 | 333 | 361 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-8 | 335 | 360 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-5 | 337 | 361 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
MFRRDQSTDD VPVTEQASSN EETGLEEPMR QLSVGTEAGS YPERPNEPDC IYYLRNGICG 60 YGSRCRFNHP RDRSLAVGER RATGGEYPER AGQYVCQYYM RTGMCRFGAS CKYHHPRQGE 120 ESPSLVIHNI FGYPLRPNEK ECAHYMKTGH CKFGIICKFN HPQPTGVQVP ASAAGPFPLP 180 AVVPPPATYP ELRPLPVDSA EQYGIITGNW PVIGPALLSD SYTPDTYGPM FFPPEVVPVS 240 DWTHYLGSTS PVQYQTTQSA AGAGPVPCQS SHSAAGTGPV PSQTTQSAAG AGPIYGHTGL 300 SASAPAYASP YASLTASRGA SSSIQDGLAF PERPGQPECH YYMKYGDCKF GSSCKYQHPP 360 ESSGSKAALI LRAMGLPPDL * |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975518 | 0.0 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004241158.2 | 0.0 | zinc finger CCCH domain-containing protein 5-like isoform X1 | ||||
TrEMBL | M1D145 | 0.0 | M1D145_SOLTU; Uncharacterized protein | ||||
STRING | Solyc06g054620.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA18578 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06410.1 | 5e-86 | C3H family protein |