PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim06g035490.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 266aa MW: 30309.1 Da PI: 6.996 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.2 | 1.3e-12 | 85 | 137 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++++h e+Er+RR+++ + ++ Lr+ lP + ++K s ++ +A +YI +Lq Sopim06g035490.0.1 85 KKVMHREIERQRRQEMSTLYASLRQQLPLeN---IKGKRSTSDHILEAANYIEQLQ 137 6899*************************66...*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.44E-14 | 81 | 153 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.59E-10 | 82 | 141 | No hit | No description |
PROSITE profile | PS50888 | 13.116 | 84 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.1E-10 | 85 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.1E-10 | 86 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.8E-4 | 90 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MDNFHSIFPL QPDDDANYDS HQQQLIFPHE TYTNPCNFIY QQDLVNDFAS FDSLELRDNN 60 LTFNNNTNNN QKGKSCGVED KKKHKKVMHR EIERQRRQEM STLYASLRQQ LPLENIKGKR 120 STSDHILEAA NYIEQLQKNV KNLEEKREKL MKDSTGLSNV DGINKSGRST SRHCSPPAIV 180 TVKECLDGME ILVNCGLGFR LSRVLQVLLQ EGLSIVNCSS TKTNTSSLLH TIRTEVSSTD 240 QPRIINVDVI QQKLTDIIHD DTSFK* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC211020 | 0.0 | AC211020.2 Solanum lycopersicum chromosome 6 clone C06HBa0003K02, complete sequence. | |||
GenBank | HG975518 | 0.0 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001333234.1 | 0.0 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||
TrEMBL | A0A3Q7GQ83 | 0.0 | A0A3Q7GQ83_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g035490.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA598 | 24 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51790.1 | 2e-34 | bHLH family protein |