PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim06g005310.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 173aa    MW: 20228.6 Da    PI: 6.2743
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim06g005310.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.6e-16243548
                        -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        T++E+ l+++++ ++G++ W++Ia +++ gRt++++k++w++++
  Sopim06g005310.0.1  2 TPQEERLILELHSKWGNR-WSRIAMKLP-GRTDNEIKNYWRTHM 43
                        9*****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.167147IPR017930Myb domain
CDDcd001672.10E-11143No hitNo description
SMARTSM007179.4E-12145IPR001005SANT/Myb domain
SuperFamilySSF466891.25E-12248IPR009057Homeodomain-like
PfamPF002491.5E-14242IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-20244IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MTPQEERLIL ELHSKWGNRW SRIAMKLPGR TDNEIKNYWR THMRKKAHDE RKNNASSFSP  60
SSSFSNSSSF SSNSPDVDFT PIKKNNERNF YDTGGLDKKN DGDKMKVYSM DEIWKDIELS  120
QISETMDNIK PIMPSPIWNY CPNTLWMSNE EETKMFPQFY CLDNQDNTFF AG*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004240351.11e-125transcription factor MYB48-like
TrEMBLA0A3Q7GRB81e-124A0A3Q7GRB8_SOLLC; Uncharacterized protein
STRINGSolyc06g005310.2.11e-125(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.27e-35myb domain protein 48