PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim06g005130.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Dof
Protein Properties Length: 309aa    MW: 34620.3 Da    PI: 6.7505
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim06g005130.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1252.4e-393898262
              zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                        +++ +kcprCds+ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rk+++ss
  Sopim06g005130.0.1 38 QDEVQKCPRCDSSNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKKQRSS 98
                        57889****************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-272791IPR003851Zinc finger, Dof-type
PfamPF027013.0E-334096IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.8634296IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104480IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MDMDSSNAQN YHQEMSSQTL ESMLACTKPQ QEKKPRPQDE VQKCPRCDSS NTKFCYYNNY  60
SLTQPRYFCK SCRRYWTKGG TLRNVPVGGG CRKKQRSSSK RSSPDNQSLM TTTTYPNNQI  120
SPLTQFSYDP NDLSLAFSRL QNQESGQLVC PKLQRTVRTE SIFSDSLYLT NFGNSVCHDV  180
FENRDMCTSS SEAFSRAGFL DTLSDGLLDA SNGFLHHNLY YYGSNGNNGN NMGHVESASG  240
EMITNFDQEV RSGALKEEIM CSDNKILLGY PWQINGDGNV ADFEYSNRQN WNGLGVPSGH  300
GLLNSPLM*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004240603.10.0dof zinc finger protein DOF2.1-like
TrEMBLA0A3Q7GR880.0A0A3Q7GR88_SOLLC; Uncharacterized protein
STRINGSolyc06g005130.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28510.12e-37Dof family protein