PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim05g055470.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 545aa    MW: 60763.6 Da    PI: 4.427
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim05g055470.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.88.5e-53101371128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         ++pGfrFhPtdeelv +yL++kv gk+l++ ++i+e+diykvePwdLp  +++k+++ ewyfFs  d+k+ +g ++nrat++gyWk+tgkd
  Sopim05g055470.0.1  10 MAPGFRFHPTDEELVRYYLRRKVIGKPLRF-DAISEIDIYKVEPWDLPgmSRLKTRDLEWYFFSVLDRKHGNGAKTNRATERGYWKTTGKD 99 
                         579*************************99.99***************6347788888********************************* PP

                 NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++v++ k+++vg+kktLvf++grapkge+t+Wvmhey+l
  Sopim05g055470.0.1 100 RAVHH-KSKVVGMKKTLVFHSGRAPKGERTNWVMHEYKL 137
                         *****.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.11E-6210160IPR003441NAC domain
PROSITE profilePS5100558.14410160IPR003441NAC domain
PfamPF023656.0E-2812137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0009962Biological Processregulation of flavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MESKGSAKWM APGFRFHPTD EELVRYYLRR KVIGKPLRFD AISEIDIYKV EPWDLPGMSR  60
LKTRDLEWYF FSVLDRKHGN GAKTNRATER GYWKTTGKDR AVHHKSKVVG MKKTLVFHSG  120
RAPKGERTNW VMHEYKLIDE ELQKAGIVQD ALVLCRVFQK SGAGPKNGEK YGAPFVEEEW  180
EDDELEIVPK EEAAEEVEFG DDIYLDGHDL EEILGADSPV DGAPHPLNCY SEGNASNSGE  240
TSNSFEEAQN WLQQPDEQES FDPAIQQINA DTNPVKHEFM SEPSNSMSTE DVDYLLDEPV  300
ITATDNLQFS DGAFLEASDL SRPIEVDTSG FDMLEDYLAF FDADDNFQSM GFNPPMMTGD  360
DDHVSDLASV EEKNIAEVND QPIAPSEEPD DQKKNVASSS KLEPSKFGSD YKYPFMKQTS  420
CMLGGIPAPP AFASEFPSKN AALRMNSSSE ASSSIHVTGF IRITNMTVSS NGMDGLVGKH  480
GNYNVILSLG LSQHGDSSAH LESEASFLPG KTISTVSWCW FYYLFLWVLL LSTTFKIGTF  540
IRAA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-451016620174NAC domain-containing protein 19
3swm_B2e-451016620174NAC domain-containing protein 19
3swm_C2e-451016620174NAC domain-containing protein 19
3swm_D2e-451016620174NAC domain-containing protein 19
3swp_A2e-451016620174NAC domain-containing protein 19
3swp_B2e-451016620174NAC domain-containing protein 19
3swp_C2e-451016620174NAC domain-containing protein 19
3swp_D2e-451016620174NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00059PBMTransfer from AT5G04410Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755170.0HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004239710.10.0NAC domain-containing protein 78
TrEMBLM1C5720.0M1C572_SOLTU; Uncharacterized protein
STRINGSolyc05g055470.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31412450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-128NAC domain containing protein 2