PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim05g053500.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | GATA | ||||||||
Protein Properties | Length: 246aa MW: 27875.1 Da PI: 7.7809 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 62.1 | 6.8e-20 | 179 | 212 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C++Cg+ kTp+WR gp g+ktLCnaCG++y++ + Sopim05g053500.0.1 179 CQHCGVDKTPQWRAGPTGPKTLCNACGVRYKSGR 212 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.4E-16 | 173 | 223 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.387 | 173 | 209 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 9.98E-16 | 175 | 236 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 3.1E-15 | 176 | 210 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.43E-15 | 178 | 227 | No hit | No description |
Pfam | PF00320 | 1.0E-17 | 179 | 212 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 179 | 204 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
METMYSKTCF MVDDDILNFS LDDDEEKYQT SSSSFESSNT LGFRQDDHNP SFPDYVEEEL 60 EWLSNKDAFP AVEFDLFSDH VIFDHHSPNS VLENNNNNCN VNLKDNAFTS HASSLLQVPM 120 NHPVGTRSKR RRRIALQCDN SCVWGNQVKF NNTSTKQGLT LLKISMAKAK RGTSIGRTCQ 180 HCGVDKTPQW RAGPTGPKTL CNACGVRYKS GRLFPEYRPA NSPTFSVELH SNSHRKVLEM 240 RKQRI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 128 | 133 | KRRRRI |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00377 | DAP | Transfer from AT3G24050 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975517 | 0.0 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004239871.1 | 0.0 | GATA transcription factor 1 | ||||
TrEMBL | A0A3Q7GM02 | 0.0 | A0A3Q7GM02_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g053500.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4076 | 24 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24050.1 | 3e-43 | GATA transcription factor 1 |