PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim05g015330.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NF-YC
Protein Properties Length: 145aa    MW: 16239.7 Da    PI: 9.9564
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim05g015330.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC55.51.3e-17221061598
               NF-YC  15 dfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivpr 98 
                         + ++ ++P++r+kki+k d+d+++i +ea  l++ + elf+  l+ +s   a e+kr+t+k   +  av+r + + dfl+d  p 
  Sopim05g015330.0.1  22 ETHQLQIPISRVKKIMKLDQDINKINSEALYLIASSTELFLELLAEKSAQVALEKKRKTIKLEHLRVAVKRHKpTSDFLLDSLPM 106
                         5567899*********************************9999*************************9976489*****9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.1E-2021107IPR009072Histone-fold
Gene3DG3DSA:1.10.20.104.4E-212391IPR009072Histone-fold
PfamPF008081.5E-192790IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MTRVLDTMPG EDEEGTSTVA GETHQLQIPI SRVKKIMKLD QDINKINSEA LYLIASSTEL  60
FLELLAEKSA QVALEKKRKT IKLEHLRVAV KRHKPTSDFL LDSLPMPSQP LDRSPKVQSR  120
PRSSTDNPLP SGTRRIEAFF QKCT*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755170.0HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004239516.21e-101nuclear transcription factor Y subunit C-2
TrEMBLA0A3Q7GII11e-100A0A3Q7GII1_SOLLC; Uncharacterized protein
STRINGSolyc05g015330.1.11e-101(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA114352425
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.15e-48nuclear factor Y, subunit C13